Gene annotation
| Transcriptome id | Sobic.001G432500.1 |
|---|---|
| Synonym | Sb01g040690 |
| Functional annotation | expressed protein |
| UniProt | C5WQU3 |
| Pfam | PF13962 |
| Panther DB | PTHR24177:SF60 PTHR24177 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G11000 : Ankyrin repeat family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g15080.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a001648 , Zm00025a001645 , Zm00025a001653 |
| Brachypodium | KQK22509 |
| Barley | HORVU4Hr1G062330.1 , HORVU4Hr1G062330.2 |
| Wheat | TraesCS4B02G220000 , TraesCS4A02G084200 , TraesCS4B02G220100 , TraesCS4A02G084100 , TraesCS4D02G220400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G028600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY112, expressed | - |
| 2 | Sobic.002G040400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 3 | Sobic.002G298400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dehydrodolichyl diphosphate synthase, putative, expressed | K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase |
| 4 | Sobic.002G087500 | - | - |
| 5 | Sobic.005G219000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@patatin, putative, expressed | - |
| 6 | Sobic.006G005500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed | - |
| 7 | Sobic.002G391700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase, putative, expressed | K00430: peroxidase |
| 8 | Sobic.001G125700 | lipoxygenase, putative, expressed | K15718: linoleate 9S-lipoxygenase |
| 9 | Sobic.007G076000 | Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@Cinnamyl alcohol dehydrogenase 9 CAD9 (At)(PubMedID : 27208977)@dehydrogenase, putative, expressed | K00083: cinnamyl-alcohol dehydrogenase |
| 10 | Sobic.006G007650 | - | - |
| 11 | Sobic.001G291500 | - | - |
| 12 | Sobic.008G077800 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 13 | Sobic.005G219100 | patatin, putative, expressed | - |
| 14 | Sobic.002G093600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Jacalin-like lectin domain containing protein, putative, expressed | - |
| 15 | Sobic.009G014600 | Lipase class 3 family protein (At)(PubMedID : 27208977)@phospholipase, putative, expressed | - |
| 16 | Sobic.007G055600 | "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed | K14174: beta-farnesene/exo-alpha-bergamotene synthase |
| 17 | Sobic.004G143801 | - | - |
| 18 | Sobic.006G007300 | - | - |
| 19 | Sobic.008G028566 | - | - |
| 20 | Sobic.010G225500 | - | - |
Gene co-expression network
Octagon: transcription factors
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