Gene annotation
Transcriptome id Sobic.001G125700.3,Sobic.001G125700.1,Sobic.001G125700.2
Synonym ATLOX1, Sb01g011030, LOX1
Functional annotation lipoxygenase, putative, expressed
UniProt A0A1Z5S5E9 , A0A1B6QIN6 , A0A1B6QIN2
Pfam PF01477 PF00305 PF00305
Panther DB PTHR11771 PTHR11771:SF53
NCBI CDD -
KEGG Orthology K15718; linoleate 9S-lipoxygenase
Gene Ontology GO:0016702; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen GO:0005515protein binding GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen


Orthologs (automatic annotation)
TAIR AT1G55020 : lipoxygenase 1
RAP-DB (Rice) LOC_Os03g49380.1 : lipoxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a026458 , Zm00025a007722 , Zm00025a007727 , Zm00025a026461 , Zm00025a007723 , Zm00025a007726 , Zm00025a017057
Brachypodium PNT74274 , KQK13307 , KQJ93839 , KQK13661 , KQK13662
Barley HORVU5Hr1G001180.8 , HORVU5Hr1G001180.1 , HORVU5Hr1G001180.3 , HORVU5Hr1G001180.2 , HORVU5Hr1G001180.5 , HORVU5Hr1G001180.7 , HORVU5Hr1G001180.6 , HORVU5Hr1G093770.11 , HORVU5Hr1G093770.10 , HORVU5Hr1G093770.13 , HORVU5Hr1G093770.12 , HORVU4Hr1G005920.14 , HORVU4Hr1G005920.10 , HORVU4Hr1G005920.11 , HORVU4Hr1G005920.12 , HORVU4Hr1G005920.13 , HORVU5Hr1G093770.9 , HORVU5Hr1G093770.8 , HORVU5Hr1G093770.5 , HORVU5Hr1G093770.4 , HORVU5Hr1G093770.7 , HORVU5Hr1G093770.6 , HORVU5Hr1G093770.1 , HORVU5Hr1G093770.3 , HORVU5Hr1G093770.2 , HORVU5Hr1G001180.11 , HORVU4Hr1G005920.8 , HORVU4Hr1G005920.9 , HORVU4Hr1G005920.6 , HORVU4Hr1G005920.7 , HORVU4Hr1G005920.4 , HORVU4Hr1G005920.5 , HORVU4Hr1G005920.2 , HORVU4Hr1G005920.3 , HORVU4Hr1G005920.1
Wheat TraesCS3B02G602500 , TraesCS6A02G166000 , TraesCS4D02G035100 , TraesCS4D02G035100 , TraesCS5D02G388700 , TraesCS5D02G388800 , TraesCS5D02G388800 , TraesCS5A02G007900 , TraesCS3B02G605700 , TraesCS4D02G035200 , TraesCS5B02G006500 , TraesCS4A02G275800 , TraesCS4A02G275900 , TraesCS6B02G193400 , TraesCS4B02G037800 , TraesCS6D02G154600 , TraesCS5D02G513100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G005500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed -
2 Sobic.005G219000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@patatin, putative, expressed -
3 Sobic.005G219100 patatin, putative, expressed -
4 Sobic.008G028600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY112, expressed -
5 Sobic.007G076000 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@Cinnamyl alcohol dehydrogenase 9 CAD9 (At)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
6 Sobic.002G040400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
7 Sobic.006G005400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed -
8 Sobic.007G055600 "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed K14174: beta-farnesene/exo-alpha-bergamotene synthase
9 Sobic.006G007100 cysteine proteinase At4g11310 precursor, putative, expressed -
10 Sobic.002G087500 - -
11 Sobic.006G007650 - -
12 Sobic.009G115400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.008G077800 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.009G014600 Lipase class 3 family protein (At)(PubMedID : 27208977)@phospholipase, putative, expressed -
15 Sobic.005G182701 - -
16 Sobic.002G298400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
17 Sobic.002G391700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase, putative, expressed K00430: peroxidase
18 Sobic.003G388400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
19 Sobic.006G007600 polyphenol oxidase, putative, expressed -
20 Sobic.008G028566 - -


Gene co-expression network
sample Sobic001G125700 Sobic001G125700 Sobic006G005500 Sobic006G005500 Sobic001G125700--Sobic006G005500 Sobic005G219000 Sobic005G219000 Sobic001G125700--Sobic005G219000 Sobic005G219100 Sobic005G219100 Sobic001G125700--Sobic005G219100 Sobic008G028600 Sobic008G028600 Sobic001G125700--Sobic008G028600 Sobic007G076000 Sobic007G076000 Sobic001G125700--Sobic007G076000 Sobic002G040400 Sobic002G040400 Sobic001G125700--Sobic002G040400 Sobic006G005400 Sobic006G005400 Sobic001G125700--Sobic006G005400 Sobic007G055600 Sobic007G055600 Sobic001G125700--Sobic007G055600 Sobic006G007100 Sobic006G007100 Sobic001G125700--Sobic006G007100 Sobic006G005500--Sobic001G125700 Sobic006G005500--Sobic005G219000 Sobic006G005500--Sobic008G028600 Sobic006G005500--Sobic005G219100 Sobic006G005500--Sobic007G076000 Sobic006G005500--Sobic002G040400 Sobic006G005500--Sobic007G055600 Sobic006G005500--Sobic006G005400 Sobic006G007650 Sobic006G007650 Sobic006G005500--Sobic006G007650 Sobic005G219000--Sobic005G219100 Sobic005G219000--Sobic001G125700 Sobic005G219000--Sobic006G005500 Sobic005G219000--Sobic008G028600 Sobic005G219000--Sobic002G040400 Sobic008G077800 Sobic008G077800 Sobic005G219000--Sobic008G077800 Sobic005G219000--Sobic006G007100 Sobic005G219000--Sobic006G005400 Sobic002G087500 Sobic002G087500 Sobic005G219000--Sobic002G087500 Sobic005G219100--Sobic005G219000 Sobic005G219100--Sobic001G125700 Sobic005G219100--Sobic006G007100 Sobic005G219100--Sobic006G005500 Sobic005G219100--Sobic006G005400 Sobic005G219100--Sobic008G028600 Sobic005G219100--Sobic008G077800 Sobic005G219100--Sobic002G040400 Sobic008G028566 Sobic008G028566 Sobic005G219100--Sobic008G028566 Sobic008G028600--Sobic002G040400 Sobic008G028600--Sobic005G219000 Sobic008G028600--Sobic002G087500 Sobic008G028600--Sobic006G005500 Sobic008G028600--Sobic001G125700 Sobic002G391700 Sobic002G391700 Sobic008G028600--Sobic002G391700 Sobic002G298400 Sobic002G298400 Sobic008G028600--Sobic002G298400 Sobic008G028600--Sobic008G077800 Sobic008G028600--Sobic005G219100 Sobic007G076000--Sobic007G055600 Sobic005G182701 Sobic005G182701 Sobic007G076000--Sobic005G182701 Sobic007G076000--Sobic006G005500 Sobic007G076000--Sobic001G125700 Sobic007G076000--Sobic002G040400 Sobic007G076000--Sobic008G028600 Sobic009G014600 Sobic009G014600 Sobic007G076000--Sobic009G014600 Sobic007G076000--Sobic005G219000 Sobic007G076000--Sobic006G007650 Sobic002G040400--Sobic008G028600 Sobic002G040400--Sobic002G087500 Sobic002G040400--Sobic002G298400 Sobic002G040400--Sobic002G391700 Sobic002G040400--Sobic006G005500 Sobic002G040400--Sobic005G219000 Sobic002G040400--Sobic001G125700 Sobic002G040400--Sobic008G077800 Sobic002G040400--Sobic007G076000 Sobic006G005400--Sobic006G007100 Sobic006G005400--Sobic005G219100 Sobic006G005400--Sobic001G125700 Sobic006G005400--Sobic005G219000 Sobic006G005400--Sobic006G005500 Sobic006G007600 Sobic006G007600 Sobic006G005400--Sobic006G007600 Sobic009G115400 Sobic009G115400 Sobic006G005400--Sobic009G115400 Sobic003G388400 Sobic003G388400 Sobic006G005400--Sobic003G388400 Sobic001G291500 Sobic001G291500 Sobic006G005400--Sobic001G291500 Sobic007G055600--Sobic005G182701 Sobic007G055600--Sobic007G076000 Sobic007G055600--Sobic006G005500 Sobic007G055600--Sobic001G125700 Sobic007G055600--Sobic009G014600 Sobic001G056400 Sobic001G056400 Sobic007G055600--Sobic001G056400 Sobic007G055600--Sobic002G040400 Sobic007G055600--Sobic008G028600 Sobic007G055600--Sobic009G115400 Sobic006G007100--Sobic006G005400 Sobic006G007100--Sobic005G219100 Sobic006G007100--Sobic006G007600 Sobic006G007100--Sobic005G219000 Sobic006G007100--Sobic001G125700 Sobic006G007100--Sobic006G005500 Sobic006G007100--Sobic001G291500 Sobic006G007100--Sobic008G028600 Sobic006G007100--Sobic008G077800
Octagon: transcription factors


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