Gene annotation
| Transcriptome id | Sobic.006G005500.1 |
|---|---|
| Synonym | Sb06g000656 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) von Willebrand factor type A domain containing protein, putative, expressed |
| UniProt | C5YBL3 |
| Pfam | PF13519 |
| Panther DB | PTHR10579 PTHR10579:SF51 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G60710 : Zinc finger (C3HC4-type RING finger) family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os11g43040.1 : retrotransposon protein, putative, unclassified, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G125700 | lipoxygenase, putative, expressed | K15718: linoleate 9S-lipoxygenase |
| 2 | Sobic.005G219000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@patatin, putative, expressed | - |
| 3 | Sobic.008G028600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY112, expressed | - |
| 4 | Sobic.005G219100 | patatin, putative, expressed | - |
| 5 | Sobic.007G076000 | Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@Cinnamyl alcohol dehydrogenase 9 CAD9 (At)(PubMedID : 27208977)@dehydrogenase, putative, expressed | K00083: cinnamyl-alcohol dehydrogenase |
| 6 | Sobic.002G040400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 7 | Sobic.007G055600 | "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed | K14174: beta-farnesene/exo-alpha-bergamotene synthase |
| 8 | Sobic.006G005400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed | - |
| 9 | Sobic.006G007650 | - | - |
| 10 | Sobic.002G087500 | - | - |
| 11 | Sobic.006G007100 | cysteine proteinase At4g11310 precursor, putative, expressed | - |
| 12 | Sobic.009G115400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 13 | Sobic.009G014600 | Lipase class 3 family protein (At)(PubMedID : 27208977)@phospholipase, putative, expressed | - |
| 14 | Sobic.005G182701 | - | - |
| 15 | Sobic.008G077800 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 16 | Sobic.002G298400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dehydrodolichyl diphosphate synthase, putative, expressed | K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase |
| 17 | Sobic.002G391700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase, putative, expressed | K00430: peroxidase |
| 18 | Sobic.003G388400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 19 | Sobic.008G028566 | - | - |
| 20 | Sobic.001G432500 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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