Gene annotation
Transcriptome id Sobic.006G007650.1
Synonym -
Functional annotation -
UniProt A0A1Z5RBC8
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G028600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY112, expressed -
2 Sobic.006G005500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed -
3 Sobic.007G076000 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@Cinnamyl alcohol dehydrogenase 9 CAD9 (At)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
4 Sobic.002G040400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
5 Sobic.001G125700 lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
6 Sobic.005G219000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@patatin, putative, expressed -
7 Sobic.007G055600 "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed K14174: beta-farnesene/exo-alpha-bergamotene synthase
8 Sobic.002G087500 - -
9 Sobic.002G298400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
10 Sobic.005G182701 - -
11 Sobic.005G219100 patatin, putative, expressed -
12 Sobic.009G014600 Lipase class 3 family protein (At)(PubMedID : 27208977)@phospholipase, putative, expressed -
13 Sobic.009G115400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.009G115300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.002G391700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase, putative, expressed K00430: peroxidase
16 Sobic.001G432500 expressed protein -
17 Sobic.008G077800 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.006G005400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed -
19 Sobic.004G143801 - -
20 Sobic.006G007100 cysteine proteinase At4g11310 precursor, putative, expressed -


Gene co-expression network
sample Sobic006G007650 Sobic006G007650 Sobic008G028600 Sobic008G028600 Sobic006G007650--Sobic008G028600 Sobic006G005500 Sobic006G005500 Sobic006G007650--Sobic006G005500 Sobic007G076000 Sobic007G076000 Sobic006G007650--Sobic007G076000 Sobic002G040400 Sobic002G040400 Sobic006G007650--Sobic002G040400 Sobic001G125700 Sobic001G125700 Sobic006G007650--Sobic001G125700 Sobic005G219000 Sobic005G219000 Sobic006G007650--Sobic005G219000 Sobic007G055600 Sobic007G055600 Sobic006G007650--Sobic007G055600 Sobic002G087500 Sobic002G087500 Sobic006G007650--Sobic002G087500 Sobic002G298400 Sobic002G298400 Sobic006G007650--Sobic002G298400 Sobic008G028600--Sobic002G040400 Sobic008G028600--Sobic005G219000 Sobic008G028600--Sobic002G087500 Sobic008G028600--Sobic006G005500 Sobic008G028600--Sobic001G125700 Sobic002G391700 Sobic002G391700 Sobic008G028600--Sobic002G391700 Sobic008G028600--Sobic002G298400 Sobic008G077800 Sobic008G077800 Sobic008G028600--Sobic008G077800 Sobic005G219100 Sobic005G219100 Sobic008G028600--Sobic005G219100 Sobic006G005500--Sobic001G125700 Sobic006G005500--Sobic005G219000 Sobic006G005500--Sobic008G028600 Sobic006G005500--Sobic005G219100 Sobic006G005500--Sobic007G076000 Sobic006G005500--Sobic002G040400 Sobic006G005500--Sobic007G055600 Sobic006G005400 Sobic006G005400 Sobic006G005500--Sobic006G005400 Sobic006G005500--Sobic006G007650 Sobic007G076000--Sobic007G055600 Sobic005G182701 Sobic005G182701 Sobic007G076000--Sobic005G182701 Sobic007G076000--Sobic006G005500 Sobic007G076000--Sobic001G125700 Sobic007G076000--Sobic002G040400 Sobic007G076000--Sobic008G028600 Sobic009G014600 Sobic009G014600 Sobic007G076000--Sobic009G014600 Sobic007G076000--Sobic005G219000 Sobic007G076000--Sobic006G007650 Sobic002G040400--Sobic008G028600 Sobic002G040400--Sobic002G087500 Sobic002G040400--Sobic002G298400 Sobic002G040400--Sobic002G391700 Sobic002G040400--Sobic006G005500 Sobic002G040400--Sobic005G219000 Sobic002G040400--Sobic001G125700 Sobic002G040400--Sobic008G077800 Sobic002G040400--Sobic007G076000 Sobic001G125700--Sobic006G005500 Sobic001G125700--Sobic005G219000 Sobic001G125700--Sobic005G219100 Sobic001G125700--Sobic008G028600 Sobic001G125700--Sobic007G076000 Sobic001G125700--Sobic002G040400 Sobic001G125700--Sobic006G005400 Sobic001G125700--Sobic007G055600 Sobic006G007100 Sobic006G007100 Sobic001G125700--Sobic006G007100 Sobic005G219000--Sobic005G219100 Sobic005G219000--Sobic001G125700 Sobic005G219000--Sobic006G005500 Sobic005G219000--Sobic008G028600 Sobic005G219000--Sobic002G040400 Sobic005G219000--Sobic008G077800 Sobic005G219000--Sobic006G007100 Sobic005G219000--Sobic006G005400 Sobic005G219000--Sobic002G087500 Sobic007G055600--Sobic005G182701 Sobic007G055600--Sobic007G076000 Sobic007G055600--Sobic006G005500 Sobic007G055600--Sobic001G125700 Sobic007G055600--Sobic009G014600 Sobic001G056400 Sobic001G056400 Sobic007G055600--Sobic001G056400 Sobic007G055600--Sobic002G040400 Sobic007G055600--Sobic008G028600 Sobic009G115400 Sobic009G115400 Sobic007G055600--Sobic009G115400 Sobic002G087500--Sobic002G040400 Sobic002G087500--Sobic002G298400 Sobic002G087500--Sobic008G028600 Sobic002G087500--Sobic002G391700 Sobic002G093600 Sobic002G093600 Sobic002G087500--Sobic002G093600 Sobic002G087500--Sobic008G077800 Sobic002G087500--Sobic005G219000 Sobic002G087500--Sobic006G005500 Sobic002G087500--Sobic001G125700 Sobic002G298400--Sobic002G040400 Sobic002G298400--Sobic002G087500 Sobic002G298400--Sobic002G391700 Sobic002G298400--Sobic008G028600 Sobic002G298400--Sobic002G093600 Sobic002G298400--Sobic008G077800 Sobic004G143801 Sobic004G143801 Sobic002G298400--Sobic004G143801 Sobic008G028566 Sobic008G028566 Sobic002G298400--Sobic008G028566 Sobic002G298400--Sobic005G219000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.