Gene annotation
Transcriptome id Sobic.004G078600.1,Sobic.004G078600.2
Synonym LOX2, Sb04g006480, ATLOX2
Functional annotation lipoxygenase, putative, expressed
UniProt A0A194YND7 , A0A194YPD9
Pfam PF01477 PF00305
Panther DB PTHR11771 PTHR11771:SF51
NCBI CDD -
KEGG Orthology K00454; lipoxygenase
Gene Ontology GO:0005515; protein binding GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen


Orthologs (automatic annotation)
TAIR AT3G45140 : lipoxygenase 2
RAP-DB (Rice) LOC_Os02g10120.1 : lipoxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a005096 , Zm00025a034670 , Zm00025a025065 , Zm00025a019655
Brachypodium KQJ93839 , KQJ93838
Barley HORVU5Hr1G001180.5 , HORVU5Hr1G001180.9 , HORVU5Hr1G001180.8 , HORVU5Hr1G001180.1 , HORVU5Hr1G001180.3 , HORVU5Hr1G001180.2 , HORVU5Hr1G001180.7 , HORVU5Hr1G001180.6 , HORVU6Hr1G033600.8 , HORVU6Hr1G033600.9 , HORVU6Hr1G033600.4 , HORVU6Hr1G033600.5 , HORVU6Hr1G033600.6 , HORVU6Hr1G033600.7 , HORVU6Hr1G033600.1 , HORVU6Hr1G033600.2 , HORVU6Hr1G033600.3 , HORVU7Hr1G050680.7 , HORVU6Hr1G041490.1 , HORVU6Hr1G033600.10 , HORVU5Hr1G001180.11 , HORVU7Hr1G050680.9 , HORVU7Hr1G050680.2 , HORVU7Hr1G050680.3 , HORVU7Hr1G050680.1 , HORVU7Hr1G050680.4 , HORVU7Hr1G050680.5
Wheat TraesCS7A02G246200 , TraesCS6A02G166000 , TraesCS7A02G034900 , TraesCS7A02G034900 , TraesCS6B02G193400 , TraesCS2D02G313400 , TraesCS2A02G315100 , TraesCS2A02G315100 , TraesCS5A02G007900 , TraesCS5B02G006500 , TraesCS2B02G333600 , TraesCS7B02G145200 , TraesCS6D02G154600 , TraesCS5D02G013400 , TraesCS7D02G244800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G078600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G201800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
2 Sobic.002G423600 "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
3 Sobic.009G115400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.002G041800 gibberellin receptor GID1L2, putative, expressed -
5 Sobic.009G075100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@lachrymatory factor synthase, putative, expressed -
6 Sobic.005G182701 - -
7 Sobic.001G012000 cytochrome P450 71E1, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
8 Sobic.009G252100 expressed protein -
9 Sobic.007G055600 "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed K14174: beta-farnesene/exo-alpha-bergamotene synthase
10 Sobic.001G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K13222: BX1, indole-3-glycerol-phosphate lyase
11 Sobic.007G076000 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@Cinnamyl alcohol dehydrogenase 9 CAD9 (At)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
12 Sobic.005G085500 - -
13 Sobic.004G217700 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
14 Sobic.006G045000 drought-induced protein 1, putative, expressed -
15 Sobic.K044407 - -
16 Sobic.001G125700 lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
17 Sobic.006G123400 expressed protein -
18 Sobic.003G378301 - K17362: acyl-coenzyme A thioesterase 13
19 Sobic.010G225500 - -
20 Sobic.001G291500 - -


Gene co-expression network
sample Sobic004G078600 Sobic004G078600 Sobic001G201800 Sobic001G201800 Sobic004G078600--Sobic001G201800 Sobic002G423600 Sobic002G423600 Sobic004G078600--Sobic002G423600 Sobic009G115400 Sobic009G115400 Sobic004G078600--Sobic009G115400 Sobic002G041800 Sobic002G041800 Sobic004G078600--Sobic002G041800 Sobic009G075100 Sobic009G075100 Sobic004G078600--Sobic009G075100 Sobic005G182701 Sobic005G182701 Sobic004G078600--Sobic005G182701 Sobic001G012000 Sobic001G012000 Sobic004G078600--Sobic001G012000 Sobic009G252100 Sobic009G252100 Sobic004G078600--Sobic009G252100 Sobic007G055600 Sobic007G055600 Sobic004G078600--Sobic007G055600 Sobic001G201800--Sobic004G078600 Sobic001G201800--Sobic009G115400 Sobic001G201800--Sobic002G423600 Sobic001G201800--Sobic001G012000 Sobic001G201800--Sobic009G252100 Sobic002G202700 Sobic002G202700 Sobic001G201800--Sobic002G202700 Sobic006G045000 Sobic006G045000 Sobic001G201800--Sobic006G045000 Sobic001G056400 Sobic001G056400 Sobic001G201800--Sobic001G056400 Sobic002G108400 Sobic002G108400 Sobic001G201800--Sobic002G108400 Sobic002G423600--Sobic001G056400 Sobic002G423600--Sobic005G182701 Sobic002G423600--Sobic001G201800 Sobic002G423600--Sobic001G012000 Sobic002G423600--Sobic004G078600 Sobic004G217700 Sobic004G217700 Sobic002G423600--Sobic004G217700 Sobic002G423600--Sobic007G055600 SobicK044407 SobicK044407 Sobic002G423600--SobicK044407 Sobic002G423600--Sobic006G045000 Sobic001G125700 Sobic001G125700 Sobic009G115400--Sobic001G125700 Sobic006G005500 Sobic006G005500 Sobic009G115400--Sobic006G005500 Sobic007G076000 Sobic007G076000 Sobic009G115400--Sobic007G076000 Sobic009G115400--Sobic007G055600 Sobic009G115400--Sobic005G182701 Sobic006G005400 Sobic006G005400 Sobic009G115400--Sobic006G005400 Sobic009G115400--Sobic001G201800 Sobic005G219000 Sobic005G219000 Sobic009G115400--Sobic005G219000 Sobic005G219100 Sobic005G219100 Sobic009G115400--Sobic005G219100 Sobic005G085500 Sobic005G085500 Sobic002G041800--Sobic005G085500 Sobic002G041800--Sobic004G078600 Sobic002G041800--Sobic002G423600 Sobic004G195800 Sobic004G195800 Sobic002G041800--Sobic004G195800 Sobic002G041800--Sobic009G252100 Sobic002G041800--Sobic004G217700 Sobic002G209100 Sobic002G209100 Sobic002G041800--Sobic002G209100 Sobic006G060800 Sobic006G060800 Sobic002G041800--Sobic006G060800 Sobic002G041800--Sobic001G201800 Sobic009G075100--Sobic004G078600 Sobic009G233900 Sobic009G233900 Sobic009G075100--Sobic009G233900 Sobic009G075100--Sobic001G201800 Sobic009G075100--Sobic009G115400 Sobic004G007500 Sobic004G007500 Sobic009G075100--Sobic004G007500 Sobic003G214000 Sobic003G214000 Sobic009G075100--Sobic003G214000 Sobic009G075100--Sobic002G423600 Sobic001G448800 Sobic001G448800 Sobic009G075100--Sobic001G448800 Sobic009G000900 Sobic009G000900 Sobic009G075100--Sobic009G000900 Sobic005G182701--Sobic007G055600 Sobic005G182701--Sobic007G076000 Sobic005G182701--Sobic001G056400 Sobic005G182701--Sobic006G005500 Sobic005G182701--Sobic001G125700 Sobic009G014600 Sobic009G014600 Sobic005G182701--Sobic009G014600 Sobic005G182701--Sobic009G115400 Sobic009G115300 Sobic009G115300 Sobic005G182701--Sobic009G115300 Sobic005G182701--Sobic001G012000 Sobic001G012000--SobicK044407 Sobic001G012000--Sobic001G056400 Sobic001G012000--Sobic006G045000 Sobic001G012000--Sobic005G182701 Sobic001G012000--Sobic009G115300 Sobic001G012000--Sobic002G423600 Sobic008G181801 Sobic008G181801 Sobic001G012000--Sobic008G181801 Sobic003G310200 Sobic003G310200 Sobic001G012000--Sobic003G310200 Sobic001G012000--Sobic009G115400 Sobic009G252100--Sobic001G201800 Sobic005G193600 Sobic005G193600 Sobic009G252100--Sobic005G193600 Sobic008G060300 Sobic008G060300 Sobic009G252100--Sobic008G060300 Sobic009G252100--Sobic002G041800 Sobic007G037800 Sobic007G037800 Sobic009G252100--Sobic007G037800 Sobic009G252100--Sobic004G195800 Sobic009G252100--Sobic006G060800 Sobic009G252100--Sobic004G078600 Sobic010G225500 Sobic010G225500 Sobic009G252100--Sobic010G225500 Sobic007G055600--Sobic005G182701 Sobic007G055600--Sobic007G076000 Sobic007G055600--Sobic006G005500 Sobic007G055600--Sobic001G125700 Sobic007G055600--Sobic009G014600 Sobic007G055600--Sobic001G056400 Sobic002G040400 Sobic002G040400 Sobic007G055600--Sobic002G040400 Sobic008G028600 Sobic008G028600 Sobic007G055600--Sobic008G028600 Sobic007G055600--Sobic009G115400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.