Gene annotation
Transcriptome id Sobic.006G123400.1
Synonym Sb06g020373
Functional annotation expressed protein
UniProt A0A1B6PLL8
Pfam PF00646
Panther DB PTHR32133 PTHR32133:SF157
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G49610 : F-box family protein
RAP-DB (Rice) LOC_Os07g47160.1 : OsFBX259 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G225500 - -
2 Sobic.002G173900 hydroquinone glucosyltransferase, putative, expressed K08237: hydroquinone glucosyltransferase
3 Sobic.009G115300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G012000 cytochrome P450 71E1, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
5 Sobic.002G423600 "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
6 Sobic.001G201800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
7 Sobic.009G115400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.004G078600 lipoxygenase, putative, expressed K00454: lipoxygenase
9 Sobic.001G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K13222: BX1, indole-3-glycerol-phosphate lyase
10 Sobic.005G182701 - -
11 Sobic.002G202700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY76, expressed -
12 Sobic.002G041800 gibberellin receptor GID1L2, putative, expressed -
13 Sobic.K044407 - -
14 Sobic.007G055600 "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed K14174: beta-farnesene/exo-alpha-bergamotene synthase
15 Sobic.010G172300 - -
16 Sobic.003G310200 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
17 Sobic.007G076000 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@Cinnamyl alcohol dehydrogenase 9 CAD9 (At)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
18 Sobic.001G056500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K13222: BX1, indole-3-glycerol-phosphate lyase
19 Sobic.005G085500 - -
20 Sobic.003G378301 - K17362: acyl-coenzyme A thioesterase 13


Gene co-expression network
sample Sobic006G123400 Sobic006G123400 Sobic010G225500 Sobic010G225500 Sobic006G123400--Sobic010G225500 Sobic002G173900 Sobic002G173900 Sobic006G123400--Sobic002G173900 Sobic009G115300 Sobic009G115300 Sobic006G123400--Sobic009G115300 Sobic001G012000 Sobic001G012000 Sobic006G123400--Sobic001G012000 Sobic002G423600 Sobic002G423600 Sobic006G123400--Sobic002G423600 Sobic001G201800 Sobic001G201800 Sobic006G123400--Sobic001G201800 Sobic009G115400 Sobic009G115400 Sobic006G123400--Sobic009G115400 Sobic004G078600 Sobic004G078600 Sobic006G123400--Sobic004G078600 Sobic001G056400 Sobic001G056400 Sobic006G123400--Sobic001G056400 Sobic001G432500 Sobic001G432500 Sobic010G225500--Sobic001G432500 Sobic002G202700 Sobic002G202700 Sobic010G225500--Sobic002G202700 Sobic010G225500--Sobic009G115300 Sobic001G291500 Sobic001G291500 Sobic010G225500--Sobic001G291500 Sobic010G225500--Sobic006G123400 Sobic010G225500--Sobic009G115400 Sobic006G005500 Sobic006G005500 Sobic010G225500--Sobic006G005500 Sobic002G108400 Sobic002G108400 Sobic010G225500--Sobic002G108400 Sobic001G125700 Sobic001G125700 Sobic010G225500--Sobic001G125700 Sobic002G173900--Sobic006G123400 Sobic002G041800 Sobic002G041800 Sobic002G173900--Sobic002G041800 Sobic002G130500 Sobic002G130500 Sobic002G173900--Sobic002G130500 Sobic005G085500 Sobic005G085500 Sobic002G173900--Sobic005G085500 Sobic002G173900--Sobic001G012000 Sobic003G310200 Sobic003G310200 Sobic002G173900--Sobic003G310200 SobicK044407 SobicK044407 Sobic002G173900--SobicK044407 Sobic005G133166 Sobic005G133166 Sobic002G173900--Sobic005G133166 Sobic008G181801 Sobic008G181801 Sobic002G173900--Sobic008G181801 Sobic005G182701 Sobic005G182701 Sobic009G115300--Sobic005G182701 Sobic007G055600 Sobic007G055600 Sobic009G115300--Sobic007G055600 Sobic007G076000 Sobic007G076000 Sobic009G115300--Sobic007G076000 Sobic009G115300--Sobic001G012000 Sobic009G115300--Sobic009G115400 Sobic006G007650 Sobic006G007650 Sobic009G115300--Sobic006G007650 Sobic009G115300--Sobic001G056400 Sobic009G115300--Sobic006G005500 Sobic009G115300--Sobic001G125700 Sobic001G012000--SobicK044407 Sobic001G012000--Sobic001G056400 Sobic006G045000 Sobic006G045000 Sobic001G012000--Sobic006G045000 Sobic001G012000--Sobic005G182701 Sobic001G012000--Sobic009G115300 Sobic001G012000--Sobic002G423600 Sobic001G012000--Sobic008G181801 Sobic001G012000--Sobic003G310200 Sobic001G012000--Sobic009G115400 Sobic002G423600--Sobic001G056400 Sobic002G423600--Sobic005G182701 Sobic002G423600--Sobic001G201800 Sobic002G423600--Sobic001G012000 Sobic002G423600--Sobic004G078600 Sobic004G217700 Sobic004G217700 Sobic002G423600--Sobic004G217700 Sobic002G423600--Sobic007G055600 Sobic002G423600--SobicK044407 Sobic002G423600--Sobic006G045000 Sobic001G201800--Sobic004G078600 Sobic001G201800--Sobic009G115400 Sobic001G201800--Sobic002G423600 Sobic001G201800--Sobic001G012000 Sobic009G252100 Sobic009G252100 Sobic001G201800--Sobic009G252100 Sobic001G201800--Sobic002G202700 Sobic001G201800--Sobic006G045000 Sobic001G201800--Sobic001G056400 Sobic001G201800--Sobic002G108400 Sobic009G115400--Sobic001G125700 Sobic009G115400--Sobic006G005500 Sobic009G115400--Sobic007G076000 Sobic009G115400--Sobic007G055600 Sobic009G115400--Sobic005G182701 Sobic006G005400 Sobic006G005400 Sobic009G115400--Sobic006G005400 Sobic009G115400--Sobic001G201800 Sobic005G219000 Sobic005G219000 Sobic009G115400--Sobic005G219000 Sobic005G219100 Sobic005G219100 Sobic009G115400--Sobic005G219100 Sobic004G078600--Sobic001G201800 Sobic004G078600--Sobic002G423600 Sobic004G078600--Sobic009G115400 Sobic004G078600--Sobic002G041800 Sobic009G075100 Sobic009G075100 Sobic004G078600--Sobic009G075100 Sobic004G078600--Sobic005G182701 Sobic004G078600--Sobic001G012000 Sobic004G078600--Sobic009G252100 Sobic004G078600--Sobic007G055600 Sobic001G056400--Sobic005G182701 Sobic001G056400--Sobic001G012000 Sobic001G056400--Sobic007G055600 Sobic001G056400--SobicK044407 Sobic003G378301 Sobic003G378301 Sobic001G056400--Sobic003G378301 Sobic001G056400--Sobic007G076000 Sobic001G056400--Sobic002G423600 Sobic001G056500 Sobic001G056500 Sobic001G056400--Sobic001G056500 Sobic001G056400--Sobic006G045000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.