Gene annotation
Transcriptome id Sobic.005G193600.1
Synonym Sb05g025040, KCS20
Functional annotation 3 Ketoacyl CoA synthetase 2 KCS2 (fatty acid elongase) (At) (PubMedID : 27208977)
3-ketoacyl-CoA synthase, putative, expressed
UniProt Q9XEP1
Pfam PF08541 PF08392
Panther DB PTHR31561 PTHR31561:SF25
NCBI CDD -
KEGG Orthology K15397; 3-ketoacyl-CoA synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G04220 : 3-ketoacyl-CoA synthase 2
RAP-DB (Rice) LOC_Os11g37900.1 : 3-ketoacyl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a036645 , Zm00025a020257 , Zm00025a001551 , Zm00025a042702 , Zm00025a029505 , Zm00025a044614 , Zm00025a028878 , Zm00025a032652 , Zm00025a052892 , Zm00025a021922 , Zm00025a028880
Brachypodium KQJ88016 , KQK01599 , KQK16807
Barley HORVU6Hr1G073300.1 , HORVU7Hr1G023530.2 , HORVU7Hr1G023530.1 , HORVU4Hr1G067340.4 , HORVU1Hr1G089710.1 , HORVU1Hr1G089710.2 , HORVU1Hr1G089710.3 , HORVU1Hr1G086760.1 , HORVU7Hr1G042070.2 , HORVU7Hr1G042070.3 , HORVU7Hr1G042070.1 , HORVU7Hr1G084610.10 , HORVU7Hr1G084610.11 , HORVU4Hr1G067340.2 , HORVU4Hr1G067340.3 , HORVU4Hr1G067340.1 , HORVU7Hr1G084610.1 , HORVU7Hr1G084610.2 , HORVU7Hr1G084610.3 , HORVU7Hr1G084610.4 , HORVU7Hr1G084610.5 , HORVU7Hr1G084610.6 , HORVU7Hr1G084610.7 , HORVU7Hr1G084610.8 , HORVU7Hr1G084610.9 , HORVU1Hr1G090730.1
Wheat TraesCS4A02G065300 , TraesCS4D02G242200 , TraesCS6B02G473900 , TraesCS6A02G415500 , TraesCS6A02G415500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G252100 expressed protein -
2 Sobic.008G060300 transcription factor(PubMedID : 30367619)@WRKY45, expressed -
3 Sobic.001G012000 cytochrome P450 71E1, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
4 Sobic.001G201800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
5 Sobic.008G181801 - -
6 Sobic.006G229500 receptor-like kinase, putative, expressed -
7 Sobic.K044407 - -
8 Sobic.001G381300 WRKY79, expressed -
9 Sobic.005G193500 receptor-like kinase, putative, expressed -
10 Sobic.004G195800 heavy metal associated domain containing protein, expressed -
11 Sobic.005G085500 - -
12 Sobic.006G060800 basic proline-rich protein, putative, expressed -
13 Sobic.002G041800 gibberellin receptor GID1L2, putative, expressed -
14 Sobic.006G003700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.006G045000 drought-induced protein 1, putative, expressed -
16 Sobic.007G129201 - -
17 Sobic.003G310200 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
18 Sobic.002G423600 "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
19 Sobic.002G202700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY76, expressed -
20 Sobic.003G378301 - K17362: acyl-coenzyme A thioesterase 13


Gene co-expression network
sample Sobic005G193600 Sobic005G193600 Sobic009G252100 Sobic009G252100 Sobic005G193600--Sobic009G252100 Sobic008G060300 Sobic008G060300 Sobic005G193600--Sobic008G060300 Sobic001G012000 Sobic001G012000 Sobic005G193600--Sobic001G012000 Sobic001G201800 Sobic001G201800 Sobic005G193600--Sobic001G201800 Sobic008G181801 Sobic008G181801 Sobic005G193600--Sobic008G181801 Sobic006G229500 Sobic006G229500 Sobic005G193600--Sobic006G229500 SobicK044407 SobicK044407 Sobic005G193600--SobicK044407 Sobic001G381300 Sobic001G381300 Sobic005G193600--Sobic001G381300 Sobic005G193500 Sobic005G193500 Sobic005G193600--Sobic005G193500 Sobic009G252100--Sobic001G201800 Sobic009G252100--Sobic005G193600 Sobic009G252100--Sobic008G060300 Sobic002G041800 Sobic002G041800 Sobic009G252100--Sobic002G041800 Sobic007G037800 Sobic007G037800 Sobic009G252100--Sobic007G037800 Sobic004G195800 Sobic004G195800 Sobic009G252100--Sobic004G195800 Sobic006G060800 Sobic006G060800 Sobic009G252100--Sobic006G060800 Sobic004G078600 Sobic004G078600 Sobic009G252100--Sobic004G078600 Sobic010G225500 Sobic010G225500 Sobic009G252100--Sobic010G225500 Sobic008G060300--Sobic006G060800 Sobic008G060300--Sobic009G252100 Sobic008G060300--Sobic005G193600 Sobic008G060300--Sobic001G201800 Sobic002G202700 Sobic002G202700 Sobic008G060300--Sobic002G202700 Sobic007G129201 Sobic007G129201 Sobic008G060300--Sobic007G129201 Sobic008G060300--Sobic005G193500 Sobic008G060300--Sobic004G195800 Sobic003G366100 Sobic003G366100 Sobic008G060300--Sobic003G366100 Sobic001G012000--SobicK044407 Sobic001G056400 Sobic001G056400 Sobic001G012000--Sobic001G056400 Sobic006G045000 Sobic006G045000 Sobic001G012000--Sobic006G045000 Sobic005G182701 Sobic005G182701 Sobic001G012000--Sobic005G182701 Sobic009G115300 Sobic009G115300 Sobic001G012000--Sobic009G115300 Sobic002G423600 Sobic002G423600 Sobic001G012000--Sobic002G423600 Sobic001G012000--Sobic008G181801 Sobic003G310200 Sobic003G310200 Sobic001G012000--Sobic003G310200 Sobic009G115400 Sobic009G115400 Sobic001G012000--Sobic009G115400 Sobic001G201800--Sobic004G078600 Sobic001G201800--Sobic009G115400 Sobic001G201800--Sobic002G423600 Sobic001G201800--Sobic001G012000 Sobic001G201800--Sobic009G252100 Sobic001G201800--Sobic002G202700 Sobic001G201800--Sobic006G045000 Sobic001G201800--Sobic001G056400 Sobic002G108400 Sobic002G108400 Sobic001G201800--Sobic002G108400 Sobic008G181801--SobicK044407 Sobic009G241500 Sobic009G241500 Sobic008G181801--Sobic009G241500 Sobic008G181801--Sobic001G012000 Sobic008G181801--Sobic006G045000 Sobic005G226100 Sobic005G226100 Sobic008G181801--Sobic005G226100 Sobic005G085500 Sobic005G085500 Sobic008G181801--Sobic005G085500 Sobic008G181801--Sobic003G310200 Sobic005G082700 Sobic005G082700 Sobic008G181801--Sobic005G082700 Sobic003G037100 Sobic003G037100 Sobic008G181801--Sobic003G037100 Sobic006G229500--Sobic005G193600 Sobic006G003700 Sobic006G003700 Sobic006G229500--Sobic006G003700 Sobic006G229500--Sobic001G381300 Sobic010G045000 Sobic010G045000 Sobic006G229500--Sobic010G045000 Sobic006G229500--Sobic008G181801 Sobic003G291700 Sobic003G291700 Sobic006G229500--Sobic003G291700 Sobic006G229500--Sobic005G226100 Sobic006G229500--Sobic009G241500 Sobic004G158050 Sobic004G158050 Sobic006G229500--Sobic004G158050 SobicK044407--Sobic001G012000 SobicK044407--Sobic001G056400 SobicK044407--Sobic008G181801 SobicK044407--Sobic006G045000 Sobic003G378301 Sobic003G378301 SobicK044407--Sobic003G378301 SobicK044407--Sobic003G310200 SobicK044407--Sobic005G182701 SobicK044407--Sobic002G423600 Sobic007G055600 Sobic007G055600 SobicK044407--Sobic007G055600 Sobic001G381300--Sobic005G226100 Sobic001G381300--Sobic005G193600 Sobic001G381300--Sobic008G181801 Sobic006G246200 Sobic006G246200 Sobic001G381300--Sobic006G246200 Sobic001G146500 Sobic001G146500 Sobic001G381300--Sobic001G146500 Sobic001G381300--Sobic009G241500 Sobic009G121600 Sobic009G121600 Sobic001G381300--Sobic009G121600 Sobic001G381300--Sobic003G037100 Sobic001G381300--Sobic006G229500 Sobic005G193500--Sobic005G193600 Sobic005G193500--Sobic008G060300 Sobic005G193500--Sobic009G252100 Sobic005G193500--Sobic007G129201 Sobic005G193500--Sobic007G037800 Sobic004G019400 Sobic004G019400 Sobic005G193500--Sobic004G019400 Sobic005G193500--Sobic002G108400 Sobic005G186500 Sobic005G186500 Sobic005G193500--Sobic005G186500 Sobic005G193500--Sobic003G366100
Octagon: transcription factors


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