Gene annotation
Transcriptome id Sobic.004G169900.1
Synonym Sb04g022120
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
U-box domain containing protein, expressed
UniProt C5XU29
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT5G64660 : CYS, MET, PRO, and GLY protein 2
RAP-DB (Rice) LOC_Os02g33680.1 : U-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056025 , Zm00025a031545 , Zm00025a020593
Brachypodium KQJ99800
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G169900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G146400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR16 - Auxin-responsive SAUR gene family member, expressed -
2 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
3 Sobic.010G018300 expressed protein -
4 Sobic.002G386200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
5 Sobic.004G006500 expressed protein -
6 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
7 Sobic.005G165900 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.006G257700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal transport/detoxification protein, putative, expressed -
9 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
10 Sobic.002G199500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CaM - probable calciumbinding protein CML45(PubMedID : 31721651)@EF hand family protein, putative, expressed K02183: calmodulin
11 Sobic.003G138400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@WRKY9, expressed -
12 Sobic.010G097900 expressed protein -
13 Sobic.003G193800 calmodulin-binding protein, putative, expressed -
14 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
15 Sobic.001G071300 expressed protein -
16 Sobic.010G163150 - -
17 Sobic.009G100500 WRKY53, expressed K13424: WRKY transcription factor 33
18 Sobic.004G181300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
19 Sobic.001G030600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-N-glucosyltransferase 1, putative, expressed -
20 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic004G169900 Sobic004G169900 Sobic001G146400 Sobic001G146400 Sobic004G169900--Sobic001G146400 Sobic009G010400 Sobic009G010400 Sobic004G169900--Sobic009G010400 Sobic010G018300 Sobic010G018300 Sobic004G169900--Sobic010G018300 Sobic002G386200 Sobic002G386200 Sobic004G169900--Sobic002G386200 Sobic004G006500 Sobic004G006500 Sobic004G169900--Sobic004G006500 Sobic010G102000 Sobic010G102000 Sobic004G169900--Sobic010G102000 Sobic005G165900 Sobic005G165900 Sobic004G169900--Sobic005G165900 Sobic006G257700 Sobic006G257700 Sobic004G169900--Sobic006G257700 Sobic001G064900 Sobic001G064900 Sobic004G169900--Sobic001G064900 Sobic001G146400--Sobic010G018300 Sobic001G146400--Sobic002G386200 Sobic002G199500 Sobic002G199500 Sobic001G146400--Sobic002G199500 Sobic001G146400--Sobic004G169900 Sobic001G146500 Sobic001G146500 Sobic001G146400--Sobic001G146500 Sobic009G067400 Sobic009G067400 Sobic001G146400--Sobic009G067400 Sobic001G381300 Sobic001G381300 Sobic001G146400--Sobic001G381300 Sobic010G163150 Sobic010G163150 Sobic001G146400--Sobic010G163150 Sobic009G121600 Sobic009G121600 Sobic001G146400--Sobic009G121600 Sobic004G086800 Sobic004G086800 Sobic009G010400--Sobic004G086800 Sobic004G065900 Sobic004G065900 Sobic009G010400--Sobic004G065900 Sobic009G010400--Sobic001G064900 Sobic009G100500 Sobic009G100500 Sobic009G010400--Sobic009G100500 Sobic009G010400--Sobic006G257700 Sobic006G259000 Sobic006G259000 Sobic009G010400--Sobic006G259000 Sobic001G095700 Sobic001G095700 Sobic009G010400--Sobic001G095700 Sobic009G010400--Sobic010G102000 Sobic009G010400--Sobic004G006500 Sobic010G018300--Sobic002G386200 Sobic010G018300--Sobic001G146400 Sobic010G018300--Sobic009G067400 Sobic010G018300--Sobic001G146500 Sobic001G259500 Sobic001G259500 Sobic010G018300--Sobic001G259500 Sobic002G386200--Sobic010G018300 Sobic002G386200--Sobic001G146400 Sobic004G181200 Sobic004G181200 Sobic002G386200--Sobic004G181200 Sobic002G386200--Sobic001G146500 Sobic002G174300 Sobic002G174300 Sobic002G386200--Sobic002G174300 Sobic006G246200 Sobic006G246200 Sobic002G386200--Sobic006G246200 Sobic006G113400 Sobic006G113400 Sobic002G386200--Sobic006G113400 Sobic002G241250 Sobic002G241250 Sobic002G386200--Sobic002G241250 Sobic002G386200--Sobic001G381300 Sobic002G185200 Sobic002G185200 Sobic004G006500--Sobic002G185200 Sobic002G418900 Sobic002G418900 Sobic004G006500--Sobic002G418900 Sobic001G118900 Sobic001G118900 Sobic004G006500--Sobic001G118900 Sobic004G006500--Sobic009G010400 Sobic009G028500 Sobic009G028500 Sobic004G006500--Sobic009G028500 Sobic004G006500--Sobic004G065900 Sobic002G195800 Sobic002G195800 Sobic004G006500--Sobic002G195800 Sobic006G114200 Sobic006G114200 Sobic004G006500--Sobic006G114200 Sobic004G006500--Sobic004G086800 Sobic009G217500 Sobic009G217500 Sobic010G102000--Sobic009G217500 Sobic010G105300 Sobic010G105300 Sobic010G102000--Sobic010G105300 Sobic003G341100 Sobic003G341100 Sobic010G102000--Sobic003G341100 Sobic002G232800 Sobic002G232800 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic007G145700 Sobic007G145700 Sobic010G102000--Sobic007G145700 Sobic010G023200 Sobic010G023200 Sobic010G102000--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic010G102000--Sobic007G077100 Sobic006G273800 Sobic006G273800 Sobic010G102000--Sobic006G273800 Sobic005G165900--Sobic002G174300 Sobic003G258700 Sobic003G258700 Sobic005G165900--Sobic003G258700 Sobic005G165900--Sobic002G386200 Sobic004G160300 Sobic004G160300 Sobic005G165900--Sobic004G160300 Sobic001G071300 Sobic001G071300 Sobic005G165900--Sobic001G071300 Sobic005G165900--Sobic004G169900 Sobic005G165900--Sobic004G181200 Sobic009G214300 Sobic009G214300 Sobic005G165900--Sobic009G214300 Sobic004G220600 Sobic004G220600 Sobic005G165900--Sobic004G220600 Sobic006G257700--Sobic001G064900 Sobic006G257700--Sobic009G010400 Sobic006G257700--Sobic010G102000 Sobic004G297600 Sobic004G297600 Sobic006G257700--Sobic004G297600 Sobic006G257700--Sobic001G095700 Sobic001G287600 Sobic001G287600 Sobic006G257700--Sobic001G287600 Sobic006G257700--Sobic010G023200 Sobic007G077300 Sobic007G077300 Sobic006G257700--Sobic007G077300 Sobic006G257700--Sobic006G259000 Sobic001G064900--Sobic010G102000 Sobic001G064900--Sobic009G217500 Sobic001G064900--Sobic006G273800 Sobic001G064900--Sobic010G023200 Sobic001G064900--Sobic006G257700 Sobic001G064900--Sobic006G259000 Sobic001G064900--Sobic007G077100 Sobic001G064900--Sobic001G095700 Sobic001G064900--Sobic003G341100
Octagon: transcription factors


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