Gene annotation
Transcriptome id Sobic.002G199500.1
Synonym SORBIDRAFT_02g024550,SORBI_3002G199500 , Sb02g024550
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CaM - probable calciumbinding protein CML45 (PubMedID : 31721651)
EF hand family protein, putative, expressed
UniProt C5XC91
Pfam PF13499
Panther DB PTHR10891 PTHR10891:SF574
NCBI CDD -
KEGG Orthology K02183; calmodulin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G29000 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os09g24580.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a013927
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G199500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G146400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR16 - Auxin-responsive SAUR gene family member, expressed -
2 Sobic.001G059400 acetyltransferase, GNAT family, putative, expressed -
3 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
5 Sobic.009G100500 WRKY53, expressed K13424: WRKY transcription factor 33
6 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
7 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
8 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
9 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
10 Sobic.010G102150 - -
11 Sobic.002G232800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
12 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.010G018300 expressed protein -
14 Sobic.006G257700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal transport/detoxification protein, putative, expressed -
15 Sobic.003G193800 calmodulin-binding protein, putative, expressed -
16 Sobic.010G071000 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.007G118301 - -
18 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
19 Sobic.004G169900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@U-box domain containing protein, expressed -
20 Sobic.002G386200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -


Gene co-expression network
sample Sobic002G199500 Sobic002G199500 Sobic001G146400 Sobic001G146400 Sobic002G199500--Sobic001G146400 Sobic001G059400 Sobic001G059400 Sobic002G199500--Sobic001G059400 Sobic007G090300 Sobic007G090300 Sobic002G199500--Sobic007G090300 Sobic004G297100 Sobic004G297100 Sobic002G199500--Sobic004G297100 Sobic009G100500 Sobic009G100500 Sobic002G199500--Sobic009G100500 Sobic009G010400 Sobic009G010400 Sobic002G199500--Sobic009G010400 Sobic001G064900 Sobic001G064900 Sobic002G199500--Sobic001G064900 Sobic006G259000 Sobic006G259000 Sobic002G199500--Sobic006G259000 Sobic010G102000 Sobic010G102000 Sobic002G199500--Sobic010G102000 Sobic010G018300 Sobic010G018300 Sobic001G146400--Sobic010G018300 Sobic002G386200 Sobic002G386200 Sobic001G146400--Sobic002G386200 Sobic001G146400--Sobic002G199500 Sobic004G169900 Sobic004G169900 Sobic001G146400--Sobic004G169900 Sobic001G146500 Sobic001G146500 Sobic001G146400--Sobic001G146500 Sobic009G067400 Sobic009G067400 Sobic001G146400--Sobic009G067400 Sobic001G381300 Sobic001G381300 Sobic001G146400--Sobic001G381300 Sobic010G163150 Sobic010G163150 Sobic001G146400--Sobic010G163150 Sobic009G121600 Sobic009G121600 Sobic001G146400--Sobic009G121600 Sobic001G059400--Sobic004G297100 Sobic010G083600 Sobic010G083600 Sobic001G059400--Sobic010G083600 Sobic001G059400--Sobic002G199500 Sobic001G059400--Sobic007G090300 Sobic010G102150 Sobic010G102150 Sobic001G059400--Sobic010G102150 Sobic001G195100 Sobic001G195100 Sobic001G059400--Sobic001G195100 Sobic002G377100 Sobic002G377100 Sobic001G059400--Sobic002G377100 Sobic010G163000 Sobic010G163000 Sobic001G059400--Sobic010G163000 Sobic008G188000 Sobic008G188000 Sobic001G059400--Sobic008G188000 Sobic007G090300--Sobic009G100500 Sobic007G090300--Sobic006G259000 Sobic007G090300--Sobic002G199500 Sobic007G090300--Sobic001G059400 Sobic007G090300--Sobic010G102000 Sobic003G352400 Sobic003G352400 Sobic007G090300--Sobic003G352400 Sobic002G232800 Sobic002G232800 Sobic007G090300--Sobic002G232800 Sobic002G138700 Sobic002G138700 Sobic007G090300--Sobic002G138700 Sobic003G341100 Sobic003G341100 Sobic007G090300--Sobic003G341100 Sobic004G297100--Sobic001G059400 Sobic004G297100--Sobic001G195100 Sobic004G297100--Sobic002G199500 Sobic004G297100--Sobic010G102000 Sobic010G075600 Sobic010G075600 Sobic004G297100--Sobic010G075600 Sobic004G297100--Sobic007G090300 Sobic004G297100--Sobic008G188000 Sobic004G297100--Sobic002G232800 Sobic007G118301 Sobic007G118301 Sobic004G297100--Sobic007G118301 Sobic003G193800 Sobic003G193800 Sobic009G100500--Sobic003G193800 Sobic009G100500--Sobic009G010400 Sobic009G100500--Sobic007G090300 Sobic010G221032 Sobic010G221032 Sobic009G100500--Sobic010G221032 Sobic004G065900 Sobic004G065900 Sobic009G100500--Sobic004G065900 Sobic001G410100 Sobic001G410100 Sobic009G100500--Sobic001G410100 Sobic009G100500--Sobic002G199500 Sobic002G207300 Sobic002G207300 Sobic009G100500--Sobic002G207300 Sobic009G100500--Sobic006G259000 Sobic004G086800 Sobic004G086800 Sobic009G010400--Sobic004G086800 Sobic009G010400--Sobic004G065900 Sobic009G010400--Sobic001G064900 Sobic009G010400--Sobic009G100500 Sobic006G257700 Sobic006G257700 Sobic009G010400--Sobic006G257700 Sobic009G010400--Sobic006G259000 Sobic001G095700 Sobic001G095700 Sobic009G010400--Sobic001G095700 Sobic009G010400--Sobic010G102000 Sobic004G006500 Sobic004G006500 Sobic009G010400--Sobic004G006500 Sobic001G064900--Sobic010G102000 Sobic009G217500 Sobic009G217500 Sobic001G064900--Sobic009G217500 Sobic006G273800 Sobic006G273800 Sobic001G064900--Sobic006G273800 Sobic010G023200 Sobic010G023200 Sobic001G064900--Sobic010G023200 Sobic001G064900--Sobic006G257700 Sobic001G064900--Sobic006G259000 Sobic007G077100 Sobic007G077100 Sobic001G064900--Sobic007G077100 Sobic001G064900--Sobic001G095700 Sobic001G064900--Sobic003G341100 Sobic003G416500 Sobic003G416500 Sobic006G259000--Sobic003G416500 Sobic002G323900 Sobic002G323900 Sobic006G259000--Sobic002G323900 Sobic006G259000--Sobic010G023200 Sobic006G259000--Sobic007G077100 Sobic010G105300 Sobic010G105300 Sobic006G259000--Sobic010G105300 Sobic006G259000--Sobic001G064900 Sobic001G489500 Sobic001G489500 Sobic006G259000--Sobic001G489500 Sobic006G259000--Sobic004G086800 Sobic006G259000--Sobic009G217500 Sobic010G102000--Sobic009G217500 Sobic010G102000--Sobic010G105300 Sobic010G102000--Sobic003G341100 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic007G145700 Sobic007G145700 Sobic010G102000--Sobic007G145700 Sobic010G102000--Sobic010G023200 Sobic010G102000--Sobic007G077100 Sobic010G102000--Sobic006G273800
Octagon: transcription factors


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