Gene annotation
Transcriptome id Sobic.002G232800.1
Synonym ATL6, Sb02g027200
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5X313
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology K10664; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G05200 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g29310.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053229 , Zm00025a047331 , Zm00025a004942 , Zm00025a014119
Brachypodium PNT68308 , PNT64755
Barley HORVU6Hr1G022590.2 , HORVU6Hr1G022590.1 , HORVU4Hr1G078260.1 , HORVU5Hr1G069980.1
Wheat TraesCS3B02G549900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
2 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
3 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
4 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
5 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
6 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.010G071000 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.010G209100 WRKY28, expressed -
9 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.007G077200 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
11 Sobic.001G196900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@CPuORF40 - conserved peptide uORF-containing transcript, expressed K14488: SAUR family protein
12 Sobic.003G144800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.005G109000 cytochrome P450, putative, expressed -
14 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
15 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
16 Sobic.001G192800 AAA-type ATPase family protein, putative, expressed -
17 Sobic.010G163000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
18 Sobic.010G105300 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
19 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
20 Sobic.009G044400 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed K05933: aminocyclopropanecarboxylate oxidase


Gene co-expression network
sample Sobic002G232800 Sobic002G232800 Sobic010G102000 Sobic010G102000 Sobic002G232800--Sobic010G102000 Sobic003G341100 Sobic003G341100 Sobic002G232800--Sobic003G341100 Sobic009G217500 Sobic009G217500 Sobic002G232800--Sobic009G217500 Sobic001G341600 Sobic001G341600 Sobic002G232800--Sobic001G341600 Sobic007G077100 Sobic007G077100 Sobic002G232800--Sobic007G077100 Sobic010G023200 Sobic010G023200 Sobic002G232800--Sobic010G023200 Sobic010G071000 Sobic010G071000 Sobic002G232800--Sobic010G071000 Sobic010G209100 Sobic010G209100 Sobic002G232800--Sobic010G209100 Sobic007G090300 Sobic007G090300 Sobic002G232800--Sobic007G090300 Sobic010G102000--Sobic009G217500 Sobic010G105300 Sobic010G105300 Sobic010G102000--Sobic010G105300 Sobic010G102000--Sobic003G341100 Sobic010G102000--Sobic002G232800 Sobic001G064900 Sobic001G064900 Sobic010G102000--Sobic001G064900 Sobic007G145700 Sobic007G145700 Sobic010G102000--Sobic007G145700 Sobic010G102000--Sobic010G023200 Sobic010G102000--Sobic007G077100 Sobic006G273800 Sobic006G273800 Sobic010G102000--Sobic006G273800 Sobic003G341100--Sobic009G217500 Sobic003G341100--Sobic007G145700 Sobic009G044400 Sobic009G044400 Sobic003G341100--Sobic009G044400 Sobic003G341100--Sobic007G077100 Sobic003G341100--Sobic010G102000 Sobic003G341100--Sobic001G341600 Sobic003G341100--Sobic006G273800 Sobic003G341100--Sobic010G023200 Sobic002G118600 Sobic002G118600 Sobic003G341100--Sobic002G118600 Sobic009G217500--Sobic006G273800 Sobic009G217500--Sobic007G077100 Sobic009G217500--Sobic003G341100 Sobic009G217500--Sobic010G023200 Sobic009G217500--Sobic010G102000 Sobic003G416500 Sobic003G416500 Sobic009G217500--Sobic003G416500 Sobic009G217500--Sobic001G341600 Sobic001G035000 Sobic001G035000 Sobic009G217500--Sobic001G035000 Sobic009G217500--Sobic001G064900 Sobic009G217600 Sobic009G217600 Sobic001G341600--Sobic009G217600 Sobic001G441100 Sobic001G441100 Sobic001G341600--Sobic001G441100 Sobic001G341600--Sobic001G035000 Sobic001G077400 Sobic001G077400 Sobic001G341600--Sobic001G077400 Sobic004G280900 Sobic004G280900 Sobic001G341600--Sobic004G280900 Sobic002G140300 Sobic002G140300 Sobic001G341600--Sobic002G140300 Sobic003G353800 Sobic003G353800 Sobic001G341600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic001G341600--Sobic002G278500 Sobic001G538866 Sobic001G538866 Sobic001G341600--Sobic001G538866 Sobic007G077100--Sobic010G023200 Sobic007G077100--Sobic009G217500 Sobic007G077100--Sobic006G273800 Sobic007G077100--Sobic003G416500 Sobic007G077100--Sobic003G341100 Sobic006G259000 Sobic006G259000 Sobic007G077100--Sobic006G259000 Sobic007G077200 Sobic007G077200 Sobic007G077100--Sobic007G077200 Sobic007G077100--Sobic010G071000 Sobic001G489500 Sobic001G489500 Sobic007G077100--Sobic001G489500 Sobic010G023200--Sobic007G077100 Sobic010G023200--Sobic009G217500 Sobic010G023200--Sobic003G416500 Sobic010G023200--Sobic006G273800 Sobic010G023200--Sobic006G259000 Sobic010G023200--Sobic010G071000 Sobic010G023200--Sobic003G341100 Sobic010G023200--Sobic001G064900 Sobic010G023200--Sobic001G489500 Sobic010G071000--Sobic010G023200 Sobic010G071000--Sobic009G217500 Sobic010G071000--Sobic007G077100 Sobic010G071000--Sobic002G232800 Sobic010G071000--Sobic007G077200 Sobic010G071000--Sobic003G416500 Sobic010G071000--Sobic003G341100 Sobic010G071000--Sobic001G341600 Sobic010G071000--Sobic010G209100 Sobic001G259600 Sobic001G259600 Sobic010G209100--Sobic001G259600 Sobic010G209100--Sobic001G341600 Sobic010G209100--Sobic001G077400 Sobic010G209100--Sobic007G077200 Sobic002G036100 Sobic002G036100 Sobic010G209100--Sobic002G036100 Sobic010G209100--Sobic004G280900 Sobic005G109000 Sobic005G109000 Sobic010G209100--Sobic005G109000 Sobic010G209100--Sobic002G140300 Sobic010G209100--Sobic009G217500 Sobic009G100500 Sobic009G100500 Sobic007G090300--Sobic009G100500 Sobic007G090300--Sobic006G259000 Sobic002G199500 Sobic002G199500 Sobic007G090300--Sobic002G199500 Sobic001G059400 Sobic001G059400 Sobic007G090300--Sobic001G059400 Sobic007G090300--Sobic010G102000 Sobic003G352400 Sobic003G352400 Sobic007G090300--Sobic003G352400 Sobic007G090300--Sobic002G232800 Sobic002G138700 Sobic002G138700 Sobic007G090300--Sobic002G138700 Sobic007G090300--Sobic003G341100
Octagon: transcription factors


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