Gene annotation
Transcriptome id Sobic.004G181300.1
Synonym Sb04g023060
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RING-H2 finger protein ATL3F, putative, expressed
UniProt A0A1Z5RN28
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G49220 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g35329.1 : RING-H2 finger protein ATL3F, putative, expressed
MaizeGDB (Corn) Zm00025a011255 , Zm00025a020694
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G018300 expressed protein -
2 Sobic.001G146400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR16 - Auxin-responsive SAUR gene family member, expressed -
3 Sobic.010G163150 - -
4 Sobic.004G169900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@U-box domain containing protein, expressed -
5 Sobic.004G160300 expressed protein -
6 Sobic.002G386200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
7 Sobic.003G037100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G146500 OsSAUR17 - Auxin-responsive SAUR gene family member, expressed -
9 Sobic.002G241250 - -
10 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
11 Sobic.009G121600 cytochrome P450 86A2, putative, expressed -
12 Sobic.009G067400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.004G181200 RING-H2 finger protein ATL3F, putative, expressed -
14 Sobic.002G214500 major ampullate spidroin 2, putative, expressed -
15 Sobic.001G059400 acetyltransferase, GNAT family, putative, expressed -
16 Sobic.008G188000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
17 Sobic.001G071300 expressed protein -
18 Sobic.003G258700 expressed protein -
19 Sobic.005G165900 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.002G199500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CaM - probable calciumbinding protein CML45(PubMedID : 31721651)@EF hand family protein, putative, expressed K02183: calmodulin


Gene co-expression network
sample Sobic004G181300 Sobic004G181300 Sobic010G018300 Sobic010G018300 Sobic004G181300--Sobic010G018300 Sobic001G146400 Sobic001G146400 Sobic004G181300--Sobic001G146400 Sobic010G163150 Sobic010G163150 Sobic004G181300--Sobic010G163150 Sobic004G169900 Sobic004G169900 Sobic004G181300--Sobic004G169900 Sobic004G160300 Sobic004G160300 Sobic004G181300--Sobic004G160300 Sobic002G386200 Sobic002G386200 Sobic004G181300--Sobic002G386200 Sobic003G037100 Sobic003G037100 Sobic004G181300--Sobic003G037100 Sobic001G146500 Sobic001G146500 Sobic004G181300--Sobic001G146500 Sobic002G241250 Sobic002G241250 Sobic004G181300--Sobic002G241250 Sobic010G018300--Sobic002G386200 Sobic010G018300--Sobic001G146400 Sobic009G067400 Sobic009G067400 Sobic010G018300--Sobic009G067400 Sobic010G018300--Sobic001G146500 Sobic001G259500 Sobic001G259500 Sobic010G018300--Sobic001G259500 Sobic001G146400--Sobic010G018300 Sobic001G146400--Sobic002G386200 Sobic002G199500 Sobic002G199500 Sobic001G146400--Sobic002G199500 Sobic001G146400--Sobic004G169900 Sobic001G146400--Sobic001G146500 Sobic001G146400--Sobic009G067400 Sobic001G381300 Sobic001G381300 Sobic001G146400--Sobic001G381300 Sobic001G146400--Sobic010G163150 Sobic009G121600 Sobic009G121600 Sobic001G146400--Sobic009G121600 Sobic010G163150--Sobic001G146400 Sobic010G163150--Sobic002G386200 Sobic010G163150--Sobic010G018300 Sobic010G163150--Sobic009G067400 Sobic004G297600 Sobic004G297600 Sobic010G163150--Sobic004G297600 Sobic009G214300 Sobic009G214300 Sobic010G163150--Sobic009G214300 Sobic010G210600 Sobic010G210600 Sobic010G163150--Sobic010G210600 Sobic010G163150--Sobic004G181300 Sobic003G258700 Sobic003G258700 Sobic010G163150--Sobic003G258700 Sobic004G169900--Sobic001G146400 Sobic009G010400 Sobic009G010400 Sobic004G169900--Sobic009G010400 Sobic004G169900--Sobic010G018300 Sobic004G169900--Sobic002G386200 Sobic004G006500 Sobic004G006500 Sobic004G169900--Sobic004G006500 Sobic010G102000 Sobic010G102000 Sobic004G169900--Sobic010G102000 Sobic005G165900 Sobic005G165900 Sobic004G169900--Sobic005G165900 Sobic006G257700 Sobic006G257700 Sobic004G169900--Sobic006G257700 Sobic001G064900 Sobic001G064900 Sobic004G169900--Sobic001G064900 Sobic001G363200 Sobic001G363200 Sobic004G160300--Sobic001G363200 Sobic004G160300--Sobic003G258700 Sobic004G181200 Sobic004G181200 Sobic004G160300--Sobic004G181200 Sobic004G160300--Sobic003G037100 Sobic002G174300 Sobic002G174300 Sobic004G160300--Sobic002G174300 Sobic004G160300--Sobic002G241250 Sobic004G160300--Sobic002G386200 Sobic006G113400 Sobic006G113400 Sobic004G160300--Sobic006G113400 Sobic004G160300--Sobic001G146500 Sobic002G386200--Sobic010G018300 Sobic002G386200--Sobic001G146400 Sobic002G386200--Sobic004G181200 Sobic002G386200--Sobic001G146500 Sobic002G386200--Sobic002G174300 Sobic006G246200 Sobic006G246200 Sobic002G386200--Sobic006G246200 Sobic002G386200--Sobic006G113400 Sobic002G386200--Sobic002G241250 Sobic002G386200--Sobic001G381300 Sobic005G226100 Sobic005G226100 Sobic003G037100--Sobic005G226100 Sobic002G269032 Sobic002G269032 Sobic003G037100--Sobic002G269032 Sobic008G181801 Sobic008G181801 Sobic003G037100--Sobic008G181801 Sobic009G241500 Sobic009G241500 Sobic003G037100--Sobic009G241500 Sobic003G037100--Sobic001G259500 Sobic001G146500--Sobic001G259500 Sobic001G146500--Sobic010G018300 Sobic001G146500--Sobic002G241250 Sobic004G052500 Sobic004G052500 Sobic001G146500--Sobic004G052500 Sobic001G146500--Sobic001G146400 Sobic002G241250--Sobic001G146500 Sobic005G041000 Sobic005G041000 Sobic002G241250--Sobic005G041000 Sobic002G241250--Sobic004G181200 Sobic002G241250--Sobic006G246200 Sobic002G241250--Sobic001G259500
Octagon: transcription factors


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