Gene annotation
Transcriptome id Sobic.005G080200.1,Sobic.005G080200.2
Synonym Sb05g006560
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Ser/Thr protein phosphatase family protein, putative, expressed
UniProt A0A1Z5RHC1 , A0A1B6PQX6
Pfam PF00149
Panther DB PTHR11668 PTHR11668:SF267
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT1G18480 : Calcineurin-like metallo-phosphoesterase superfamily protein
RAP-DB (Rice) LOC_Os11g15570.1 : Ser/Thr protein phosphatase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a034182 , Zm00025a029576
Brachypodium PNT63766 , KQJ88730
Barley HORVU4Hr1G014670.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G246100 one cut domain family member 3, putative, expressed -
2 Sobic.001G432700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G192600 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
4 Sobic.001G195100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
5 Sobic.010G194300 VQ domain containing protein, putative, expressed -
6 Sobic.003G037500 WRKY107, expressed -
7 Sobic.003G417350 - -
8 Sobic.010G075600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
9 Sobic.001G319200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.006G216700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@expressed protein -
11 Sobic.004G010300 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
12 Sobic.009G065300 expressed protein -
13 Sobic.007G123300 C1-like domain containing protein, expressed -
14 Sobic.010G102150 - -
15 Sobic.003G285500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY14, expressed -
16 Sobic.004G195000 heavy metal transport/detoxification protein, putative, expressed -
17 Sobic.001G449700 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
18 Sobic.006G178500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
19 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
20 Sobic.002G092801 - -


Gene co-expression network
sample Sobic005G080200 Sobic005G080200 Sobic006G246100 Sobic006G246100 Sobic005G080200--Sobic006G246100 Sobic001G432700 Sobic001G432700 Sobic005G080200--Sobic001G432700 Sobic001G192600 Sobic001G192600 Sobic005G080200--Sobic001G192600 Sobic001G195100 Sobic001G195100 Sobic005G080200--Sobic001G195100 Sobic010G194300 Sobic010G194300 Sobic005G080200--Sobic010G194300 Sobic003G037500 Sobic003G037500 Sobic005G080200--Sobic003G037500 Sobic003G417350 Sobic003G417350 Sobic005G080200--Sobic003G417350 Sobic010G075600 Sobic010G075600 Sobic005G080200--Sobic010G075600 Sobic001G319200 Sobic001G319200 Sobic005G080200--Sobic001G319200 Sobic003G296300 Sobic003G296300 Sobic006G246100--Sobic003G296300 Sobic006G246100--Sobic005G080200 Sobic006G246100--Sobic010G194300 Sobic002G319100 Sobic002G319100 Sobic006G246100--Sobic002G319100 Sobic001G345400 Sobic001G345400 Sobic006G246100--Sobic001G345400 Sobic004G114400 Sobic004G114400 Sobic006G246100--Sobic004G114400 Sobic004G010300 Sobic004G010300 Sobic006G246100--Sobic004G010300 Sobic010G194900 Sobic010G194900 Sobic006G246100--Sobic010G194900 Sobic004G195000 Sobic004G195000 Sobic006G246100--Sobic004G195000 Sobic002G407100 Sobic002G407100 Sobic001G432700--Sobic002G407100 Sobic007G127100 Sobic007G127100 Sobic001G432700--Sobic007G127100 Sobic001G403300 Sobic001G403300 Sobic001G432700--Sobic001G403300 Sobic006G068800 Sobic006G068800 Sobic001G432700--Sobic006G068800 Sobic009G065300 Sobic009G065300 Sobic001G432700--Sobic009G065300 Sobic010G195500 Sobic010G195500 Sobic001G432700--Sobic010G195500 Sobic001G432700--Sobic005G080200 Sobic002G327300 Sobic002G327300 Sobic001G432700--Sobic002G327300 Sobic004G302200 Sobic004G302200 Sobic001G432700--Sobic004G302200 Sobic002G192000 Sobic002G192000 Sobic001G192600--Sobic002G192000 Sobic001G367600 Sobic001G367600 Sobic001G192600--Sobic001G367600 Sobic001G038900 Sobic001G038900 Sobic001G192600--Sobic001G038900 Sobic006G158600 Sobic006G158600 Sobic001G192600--Sobic006G158600 Sobic001G423800 Sobic001G423800 Sobic001G192600--Sobic001G423800 Sobic001G055600 Sobic001G055600 Sobic001G192600--Sobic001G055600 Sobic001G481100 Sobic001G481100 Sobic001G192600--Sobic001G481100 Sobic009G221400 Sobic009G221400 Sobic001G192600--Sobic009G221400 Sobic002G353900 Sobic002G353900 Sobic001G192600--Sobic002G353900 Sobic001G314800 Sobic001G314800 Sobic001G195100--Sobic001G314800 Sobic003G102200 Sobic003G102200 Sobic001G195100--Sobic003G102200 Sobic004G297100 Sobic004G297100 Sobic001G195100--Sobic004G297100 Sobic001G059400 Sobic001G059400 Sobic001G195100--Sobic001G059400 Sobic007G118301 Sobic007G118301 Sobic001G195100--Sobic007G118301 Sobic007G090300 Sobic007G090300 Sobic001G195100--Sobic007G090300 Sobic005G109000 Sobic005G109000 Sobic001G195100--Sobic005G109000 Sobic001G088300 Sobic001G088300 Sobic001G195100--Sobic001G088300 Sobic001G195100--Sobic003G296300 Sobic010G194300--Sobic006G246100 Sobic010G194300--Sobic005G080200 Sobic010G194300--Sobic004G010300 Sobic003G285500 Sobic003G285500 Sobic010G194300--Sobic003G285500 Sobic010G194300--Sobic003G296300 Sobic010G194300--Sobic003G037500 Sobic010G194300--Sobic009G065300 Sobic006G047000 Sobic006G047000 Sobic010G194300--Sobic006G047000 Sobic010G250600 Sobic010G250600 Sobic010G194300--Sobic010G250600 Sobic003G037500--Sobic003G285500 Sobic003G192100 Sobic003G192100 Sobic003G037500--Sobic003G192100 Sobic003G037500--Sobic001G367600 Sobic001G231700 Sobic001G231700 Sobic003G037500--Sobic001G231700 Sobic004G245100 Sobic004G245100 Sobic003G037500--Sobic004G245100 Sobic003G037500--Sobic002G353900 Sobic003G228200 Sobic003G228200 Sobic003G037500--Sobic003G228200 Sobic007G155000 Sobic007G155000 Sobic003G037500--Sobic007G155000 Sobic001G304100 Sobic001G304100 Sobic003G037500--Sobic001G304100 Sobic003G417350--Sobic003G192100 Sobic002G326100 Sobic002G326100 Sobic003G417350--Sobic002G326100 Sobic001G015100 Sobic001G015100 Sobic003G417350--Sobic001G015100 Sobic002G329000 Sobic002G329000 Sobic003G417350--Sobic002G329000 Sobic003G417350--Sobic007G155000 Sobic003G417350--Sobic001G038900 Sobic003G417350--Sobic001G192600 Sobic010G268400 Sobic010G268400 Sobic003G417350--Sobic010G268400 Sobic003G417350--Sobic001G367600 Sobic010G075600--Sobic004G297100 Sobic010G075600--Sobic005G080200 Sobic007G123300 Sobic007G123300 Sobic010G075600--Sobic007G123300 Sobic006G216700 Sobic006G216700 Sobic010G075600--Sobic006G216700 Sobic010G075600--Sobic009G221400 Sobic003G339500 Sobic003G339500 Sobic010G075600--Sobic003G339500 Sobic001G454100 Sobic001G454100 Sobic010G075600--Sobic001G454100 Sobic010G075600--Sobic003G285500 Sobic003G277500 Sobic003G277500 Sobic010G075600--Sobic003G277500 Sobic001G319200--Sobic004G195000 Sobic001G319200--Sobic005G080200 Sobic001G319200--Sobic006G246100 Sobic006G113000 Sobic006G113000 Sobic001G319200--Sobic006G113000 Sobic002G067300 Sobic002G067300 Sobic001G319200--Sobic002G067300 Sobic001G319200--Sobic001G432700 Sobic001G319200--Sobic010G194300 Sobic010G192900 Sobic010G192900 Sobic001G319200--Sobic010G192900 Sobic003G360200 Sobic003G360200 Sobic001G319200--Sobic003G360200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.