Gene annotation
Transcriptome id Sobic.006G178500.1
Synonym Sb06g025310
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transmembrane amino acid transporter protein, putative, expressed
UniProt C5YDY8
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF233
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47670 : Transmembrane amino acid transporter family protein
RAP-DB (Rice) LOC_Os04g47420.1 : transmembrane amino acid transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a056818 , Zm00025a010214
Brachypodium KQJ84048
Barley HORVU2Hr1G096230.1 , HORVU2Hr1G096230.8 , HORVU2Hr1G096230.4 , HORVU2Hr1G096230.5 , HORVU2Hr1G096230.6 , HORVU2Hr1G096230.7 , HORVU2Hr1G096230.2 , HORVU2Hr1G096230.3
Wheat TraesCS2B02G423700 , TraesCS2D02G402900 , TraesCS2A02G406000
Populus -


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cDNA sequences
Sobic.006G178500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G326100 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
2 Sobic.001G449700 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
3 Sobic.007G123300 C1-like domain containing protein, expressed -
4 Sobic.003G202200 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
5 Sobic.006G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
6 Sobic.002G333400 KI domain interacting kinase 1, putative, expressed -
7 Sobic.003G417350 - -
8 Sobic.004G112300 - -
9 Sobic.006G158600 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
10 Sobic.005G186100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed -
11 Sobic.001G192600 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
12 Sobic.007G149300 expressed protein -
13 Sobic.001G481100 DUF581 domain containing protein, expressed -
14 Sobic.002G192000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AN1-like zinc finger domain containing protein, expressed -
15 Sobic.003G110200 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
16 Sobic.001G383700 OsCML27 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
17 Sobic.010G209200 WRKY28, expressed -
18 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
19 Sobic.003G364600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
20 Sobic.005G229700 GRAS family transcription factor domain containing protein, expressed -


Gene co-expression network
sample Sobic006G178500 Sobic006G178500 Sobic002G326100 Sobic002G326100 Sobic006G178500--Sobic002G326100 Sobic001G449700 Sobic001G449700 Sobic006G178500--Sobic001G449700 Sobic007G123300 Sobic007G123300 Sobic006G178500--Sobic007G123300 Sobic003G202200 Sobic003G202200 Sobic006G178500--Sobic003G202200 Sobic006G056400 Sobic006G056400 Sobic006G178500--Sobic006G056400 Sobic002G333400 Sobic002G333400 Sobic006G178500--Sobic002G333400 Sobic003G417350 Sobic003G417350 Sobic006G178500--Sobic003G417350 Sobic004G112300 Sobic004G112300 Sobic006G178500--Sobic004G112300 Sobic006G158600 Sobic006G158600 Sobic006G178500--Sobic006G158600 Sobic001G367600 Sobic001G367600 Sobic002G326100--Sobic001G367600 Sobic002G326100--Sobic004G112300 Sobic004G243100 Sobic004G243100 Sobic002G326100--Sobic004G243100 Sobic002G326100--Sobic003G417350 Sobic001G038900 Sobic001G038900 Sobic002G326100--Sobic001G038900 Sobic002G192000 Sobic002G192000 Sobic002G326100--Sobic002G192000 Sobic001G231400 Sobic001G231400 Sobic002G326100--Sobic001G231400 Sobic001G423800 Sobic001G423800 Sobic002G326100--Sobic001G423800 Sobic005G029200 Sobic005G029200 Sobic002G326100--Sobic005G029200 Sobic001G383700 Sobic001G383700 Sobic001G449700--Sobic001G383700 Sobic001G449700--Sobic003G202200 Sobic003G110200 Sobic003G110200 Sobic001G449700--Sobic003G110200 Sobic007G149300 Sobic007G149300 Sobic001G449700--Sobic007G149300 Sobic003G021500 Sobic003G021500 Sobic001G449700--Sobic003G021500 Sobic009G036000 Sobic009G036000 Sobic001G449700--Sobic009G036000 Sobic001G449700--Sobic002G333400 Sobic001G259700 Sobic001G259700 Sobic001G449700--Sobic001G259700 Sobic005G186100 Sobic005G186100 Sobic001G449700--Sobic005G186100 Sobic007G123300--Sobic001G449700 Sobic007G123300--Sobic003G202200 Sobic003G364600 Sobic003G364600 Sobic007G123300--Sobic003G364600 Sobic007G123300--Sobic003G021500 Sobic007G036900 Sobic007G036900 Sobic007G123300--Sobic007G036900 Sobic007G123300--Sobic007G149300 Sobic002G245800 Sobic002G245800 Sobic007G123300--Sobic002G245800 Sobic009G247900 Sobic009G247900 Sobic007G123300--Sobic009G247900 Sobic007G123300--Sobic001G383700 Sobic001G481100 Sobic001G481100 Sobic003G202200--Sobic001G481100 Sobic003G202200--Sobic009G247900 Sobic003G202200--Sobic001G383700 Sobic003G202200--Sobic001G449700 Sobic003G202200--Sobic003G021500 Sobic003G228900 Sobic003G228900 Sobic003G202200--Sobic003G228900 Sobic004G191400 Sobic004G191400 Sobic003G202200--Sobic004G191400 Sobic003G202200--Sobic003G364600 Sobic003G202200--Sobic009G036000 Sobic006G056400--Sobic002G333400 Sobic006G056400--Sobic006G158600 Sobic008G136400 Sobic008G136400 Sobic006G056400--Sobic008G136400 Sobic003G369100 Sobic003G369100 Sobic006G056400--Sobic003G369100 Sobic006G056400--Sobic005G186100 Sobic002G140400 Sobic002G140400 Sobic006G056400--Sobic002G140400 Sobic007G074000 Sobic007G074000 Sobic006G056400--Sobic007G074000 Sobic001G318700 Sobic001G318700 Sobic006G056400--Sobic001G318700 Sobic001G308300 Sobic001G308300 Sobic006G056400--Sobic001G308300 Sobic001G407800 Sobic001G407800 Sobic002G333400--Sobic001G407800 Sobic002G333400--Sobic006G158600 Sobic002G333400--Sobic006G056400 Sobic002G333400--Sobic008G136400 Sobic002G333400--Sobic005G186100 Sobic002G333400--Sobic003G369100 Sobic009G151600 Sobic009G151600 Sobic002G333400--Sobic009G151600 Sobic002G333400--Sobic002G140400 Sobic002G333400--Sobic007G074000 Sobic003G192100 Sobic003G192100 Sobic003G417350--Sobic003G192100 Sobic003G417350--Sobic002G326100 Sobic001G015100 Sobic001G015100 Sobic003G417350--Sobic001G015100 Sobic002G329000 Sobic002G329000 Sobic003G417350--Sobic002G329000 Sobic007G155000 Sobic007G155000 Sobic003G417350--Sobic007G155000 Sobic003G417350--Sobic001G038900 Sobic001G192600 Sobic001G192600 Sobic003G417350--Sobic001G192600 Sobic010G268400 Sobic010G268400 Sobic003G417350--Sobic010G268400 Sobic003G417350--Sobic001G367600 Sobic004G088551 Sobic004G088551 Sobic004G112300--Sobic004G088551 Sobic004G112300--Sobic002G326100 Sobic004G112300--Sobic001G231400 Sobic004G112300--Sobic002G192000 Sobic004G112300--Sobic004G243100 Sobic002G139400 Sobic002G139400 Sobic004G112300--Sobic002G139400 Sobic003G200700 Sobic003G200700 Sobic004G112300--Sobic003G200700 Sobic001G317000 Sobic001G317000 Sobic004G112300--Sobic001G317000 Sobic001G018300 Sobic001G018300 Sobic004G112300--Sobic001G018300 Sobic006G158600--Sobic008G136400 Sobic006G158600--Sobic002G192000 Sobic006G158600--Sobic002G140400 Sobic006G158600--Sobic002G333400 Sobic006G158600--Sobic006G056400 Sobic006G158600--Sobic001G038900 Sobic006G158600--Sobic001G423800 Sobic002G336600 Sobic002G336600 Sobic006G158600--Sobic002G336600 Sobic006G158600--Sobic004G243100
Octagon: transcription factors


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