Gene annotation
Transcriptome id Sobic.010G075600.1
Synonym Sb10g006590
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
expressed protein
UniProt A0A1W0VRY6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os06g10100.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
2 Sobic.005G080200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, putative, expressed -
3 Sobic.007G123300 C1-like domain containing protein, expressed -
4 Sobic.006G216700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@expressed protein -
5 Sobic.009G221400 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
6 Sobic.003G339500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
7 Sobic.001G454100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
8 Sobic.003G285500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY14, expressed -
9 Sobic.003G277500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
10 Sobic.001G192600 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
11 Sobic.003G254900 no apical meristem protein, putative, expressed -
12 Sobic.001G080100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G078100 B3 DNA binding domain containing protein, expressed -
14 Sobic.006G158600 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
15 Sobic.001G059400 acetyltransferase, GNAT family, putative, expressed -
16 Sobic.003G037500 WRKY107, expressed -
17 Sobic.010G194300 VQ domain containing protein, putative, expressed -
18 Sobic.001G195100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
19 Sobic.003G041200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.003G364600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -


Gene co-expression network
sample Sobic010G075600 Sobic010G075600 Sobic004G297100 Sobic004G297100 Sobic010G075600--Sobic004G297100 Sobic005G080200 Sobic005G080200 Sobic010G075600--Sobic005G080200 Sobic007G123300 Sobic007G123300 Sobic010G075600--Sobic007G123300 Sobic006G216700 Sobic006G216700 Sobic010G075600--Sobic006G216700 Sobic009G221400 Sobic009G221400 Sobic010G075600--Sobic009G221400 Sobic003G339500 Sobic003G339500 Sobic010G075600--Sobic003G339500 Sobic001G454100 Sobic001G454100 Sobic010G075600--Sobic001G454100 Sobic003G285500 Sobic003G285500 Sobic010G075600--Sobic003G285500 Sobic003G277500 Sobic003G277500 Sobic010G075600--Sobic003G277500 Sobic001G059400 Sobic001G059400 Sobic004G297100--Sobic001G059400 Sobic001G195100 Sobic001G195100 Sobic004G297100--Sobic001G195100 Sobic002G199500 Sobic002G199500 Sobic004G297100--Sobic002G199500 Sobic010G102000 Sobic010G102000 Sobic004G297100--Sobic010G102000 Sobic004G297100--Sobic010G075600 Sobic007G090300 Sobic007G090300 Sobic004G297100--Sobic007G090300 Sobic008G188000 Sobic008G188000 Sobic004G297100--Sobic008G188000 Sobic002G232800 Sobic002G232800 Sobic004G297100--Sobic002G232800 Sobic007G118301 Sobic007G118301 Sobic004G297100--Sobic007G118301 Sobic006G246100 Sobic006G246100 Sobic005G080200--Sobic006G246100 Sobic001G432700 Sobic001G432700 Sobic005G080200--Sobic001G432700 Sobic001G192600 Sobic001G192600 Sobic005G080200--Sobic001G192600 Sobic005G080200--Sobic001G195100 Sobic010G194300 Sobic010G194300 Sobic005G080200--Sobic010G194300 Sobic003G037500 Sobic003G037500 Sobic005G080200--Sobic003G037500 Sobic003G417350 Sobic003G417350 Sobic005G080200--Sobic003G417350 Sobic005G080200--Sobic010G075600 Sobic001G319200 Sobic001G319200 Sobic005G080200--Sobic001G319200 Sobic001G449700 Sobic001G449700 Sobic007G123300--Sobic001G449700 Sobic003G202200 Sobic003G202200 Sobic007G123300--Sobic003G202200 Sobic003G364600 Sobic003G364600 Sobic007G123300--Sobic003G364600 Sobic003G021500 Sobic003G021500 Sobic007G123300--Sobic003G021500 Sobic007G036900 Sobic007G036900 Sobic007G123300--Sobic007G036900 Sobic007G149300 Sobic007G149300 Sobic007G123300--Sobic007G149300 Sobic002G245800 Sobic002G245800 Sobic007G123300--Sobic002G245800 Sobic009G247900 Sobic009G247900 Sobic007G123300--Sobic009G247900 Sobic001G383700 Sobic001G383700 Sobic007G123300--Sobic001G383700 Sobic003G230100 Sobic003G230100 Sobic006G216700--Sobic003G230100 Sobic004G169200 Sobic004G169200 Sobic006G216700--Sobic004G169200 Sobic006G216700--Sobic001G449700 Sobic002G395300 Sobic002G395300 Sobic006G216700--Sobic002G395300 Sobic001G100501 Sobic001G100501 Sobic006G216700--Sobic001G100501 Sobic004G097100 Sobic004G097100 Sobic006G216700--Sobic004G097100 Sobic006G216700--Sobic003G037500 Sobic004G219800 Sobic004G219800 Sobic006G216700--Sobic004G219800 Sobic003G349600 Sobic003G349600 Sobic006G216700--Sobic003G349600 Sobic002G353900 Sobic002G353900 Sobic009G221400--Sobic002G353900 Sobic003G041600 Sobic003G041600 Sobic009G221400--Sobic003G041600 Sobic006G158600 Sobic006G158600 Sobic009G221400--Sobic006G158600 Sobic008G044300 Sobic008G044300 Sobic009G221400--Sobic008G044300 Sobic002G336600 Sobic002G336600 Sobic009G221400--Sobic002G336600 Sobic001G477600 Sobic001G477600 Sobic009G221400--Sobic001G477600 Sobic004G208700 Sobic004G208700 Sobic009G221400--Sobic004G208700 Sobic009G070400 Sobic009G070400 Sobic009G221400--Sobic009G070400 Sobic002G192000 Sobic002G192000 Sobic009G221400--Sobic002G192000 Sobic003G339500--Sobic003G364600 Sobic001G391500 Sobic001G391500 Sobic003G339500--Sobic001G391500 Sobic001G138600 Sobic001G138600 Sobic003G339500--Sobic001G138600 Sobic007G074000 Sobic007G074000 Sobic003G339500--Sobic007G074000 Sobic003G382800 Sobic003G382800 Sobic003G339500--Sobic003G382800 Sobic004G141200 Sobic004G141200 Sobic003G339500--Sobic004G141200 Sobic003G260300 Sobic003G260300 Sobic003G339500--Sobic003G260300 Sobic003G369100 Sobic003G369100 Sobic003G339500--Sobic003G369100 Sobic003G339500--Sobic007G036900 Sobic010G107100 Sobic010G107100 Sobic001G454100--Sobic010G107100 Sobic010G163000 Sobic010G163000 Sobic001G454100--Sobic010G163000 Sobic005G229700 Sobic005G229700 Sobic001G454100--Sobic005G229700 Sobic001G454100--Sobic006G216700 Sobic003G192100 Sobic003G192100 Sobic001G454100--Sobic003G192100 Sobic001G454100--Sobic003G285500 Sobic001G454100--Sobic006G158600 Sobic003G215800 Sobic003G215800 Sobic001G454100--Sobic003G215800 Sobic008G059200 Sobic008G059200 Sobic001G454100--Sobic008G059200 Sobic003G285500--Sobic003G037500 Sobic003G285500--Sobic009G221400 Sobic003G285500--Sobic002G353900 Sobic007G155000 Sobic007G155000 Sobic003G285500--Sobic007G155000 Sobic003G041200 Sobic003G041200 Sobic003G285500--Sobic003G041200 Sobic001G367600 Sobic001G367600 Sobic003G285500--Sobic001G367600 Sobic003G285500--Sobic003G192100 Sobic004G101300 Sobic004G101300 Sobic003G285500--Sobic004G101300 Sobic001G231700 Sobic001G231700 Sobic003G285500--Sobic001G231700 Sobic006G044932 Sobic006G044932 Sobic003G277500--Sobic006G044932 Sobic004G010300 Sobic004G010300 Sobic003G277500--Sobic004G010300 Sobic003G162700 Sobic003G162700 Sobic003G277500--Sobic003G162700 Sobic002G070200 Sobic002G070200 Sobic003G277500--Sobic002G070200 Sobic002G407700 Sobic002G407700 Sobic003G277500--Sobic002G407700 Sobic009G232266 Sobic009G232266 Sobic003G277500--Sobic009G232266 Sobic002G373001 Sobic002G373001 Sobic003G277500--Sobic002G373001 Sobic002G333300 Sobic002G333300 Sobic003G277500--Sobic002G333300 Sobic004G195000 Sobic004G195000 Sobic003G277500--Sobic004G195000
Octagon: transcription factors


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