Gene annotation
Transcriptome id Sobic.001G454100.1
Synonym MSS1, ATSTP13, Sb01g042690, STP13
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transporter family protein, putative, expressed
UniProt C5WSQ7
Pfam PF07690
Panther DB PTHR23500 PTHR23500:SF70
NCBI CDD KOG0254; Predicted transporter (major facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G26340 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os03g11900.1 : transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048377 , Zm00025a044857 , Zm00025a001328 , Zm00025a053057 , Zm00025a053058
Brachypodium KQK04292 , KQK22858 , KQK20404 , KQJ90241 , KQJ89755 , KQK15772 , KQJ93434
Barley HORVU4Hr1G067450.7 , HORVU4Hr1G067450.4 , HORVU4Hr1G067450.5 , HORVU4Hr1G067450.2 , HORVU4Hr1G067450.3 , HORVU4Hr1G067450.8 , HORVU2Hr1G064160.1 , HORVU2Hr1G064160.3 , HORVU2Hr1G064160.5 , HORVU2Hr1G064160.4 , HORVU2Hr1G064160.6 , HORVU2Hr1G064160.9 , HORVU5Hr1G065630.3 , HORVU5Hr1G065630.2 , HORVU5Hr1G065630.4 , HORVU5Hr1G065630.6 , HORVU5Hr1G065560.5 , HORVU5Hr1G065560.4 , HORVU5Hr1G065560.6 , HORVU5Hr1G065560.1 , HORVU5Hr1G065560.3 , HORVU5Hr1G065560.2 , HORVU4Hr1G067450.10 , HORVU2Hr1G064160.11 , HORVU2Hr1G064160.10 , HORVU2Hr1G064160.12 , HORVU4Hr1G067450.6 , HORVU4Hr1G067450.1 , HORVU2Hr1G041080.9 , HORVU2Hr1G041080.8 , HORVU2Hr1G041080.3 , HORVU2Hr1G041080.2 , HORVU2Hr1G041080.1 , HORVU2Hr1G041080.7 , HORVU2Hr1G041080.6 , HORVU2Hr1G041080.5 , HORVU2Hr1G041080.4
Wheat TraesCS3D02G470300 , TraesCS3A02G475400 , TraesCS5B02G225100 , TraesCS2A02G205500 , TraesCS4A02G066200 , TraesCS2B02G232900 , TraesCS3B02G518900 , TraesCS4D02G243100 , TraesCS4B02G243500 , TraesCS7A02G288800 , TraesCS2D02G264200 , TraesCS3D02G470200 , TraesCS5A02G226500 , TraesCS5D02G233900 , TraesCS6B02G384700 , TraesCS2A02G259500 , TraesCS2B02G282400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G107100 expressed protein -
2 Sobic.010G163000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
3 Sobic.005G229700 GRAS family transcription factor domain containing protein, expressed -
4 Sobic.006G216700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@expressed protein -
5 Sobic.003G192100 expressed protein -
6 Sobic.003G285500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY14, expressed -
7 Sobic.006G158600 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
8 Sobic.003G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
9 Sobic.008G059200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
10 Sobic.003G037500 WRKY107, expressed -
11 Sobic.010G102150 - -
12 Sobic.003G349600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-14 - C2H2 zinc finger protein, expressed -
13 Sobic.007G107000 pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
14 Sobic.004G058000 VQ domain containing protein, putative, expressed -
15 Sobic.003G162700 expressed protein -
16 Sobic.010G238600 transferase family protein, putative, expressed -
17 Sobic.001G399100 peroxisomal biogenesis factor 11, putative, expressed -
18 Sobic.004G037600 molybdenum cofactor synthesis protein 2 large subunit, putative, expressed K03635: MOCS2B, molybdopterin synthase catalytic subunit
19 Sobic.007G155000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
20 Sobic.003G254900 no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic001G454100 Sobic001G454100 Sobic010G107100 Sobic010G107100 Sobic001G454100--Sobic010G107100 Sobic010G163000 Sobic010G163000 Sobic001G454100--Sobic010G163000 Sobic005G229700 Sobic005G229700 Sobic001G454100--Sobic005G229700 Sobic006G216700 Sobic006G216700 Sobic001G454100--Sobic006G216700 Sobic003G192100 Sobic003G192100 Sobic001G454100--Sobic003G192100 Sobic003G285500 Sobic003G285500 Sobic001G454100--Sobic003G285500 Sobic006G158600 Sobic006G158600 Sobic001G454100--Sobic006G158600 Sobic003G215800 Sobic003G215800 Sobic001G454100--Sobic003G215800 Sobic008G059200 Sobic008G059200 Sobic001G454100--Sobic008G059200 Sobic001G399100 Sobic001G399100 Sobic010G107100--Sobic001G399100 Sobic004G058000 Sobic004G058000 Sobic010G107100--Sobic004G058000 Sobic010G107100--Sobic005G229700 Sobic009G200700 Sobic009G200700 Sobic010G107100--Sobic009G200700 Sobic010G107100--Sobic003G192100 Sobic009G143400 Sobic009G143400 Sobic010G107100--Sobic009G143400 Sobic002G423300 Sobic002G423300 Sobic010G107100--Sobic002G423300 Sobic009G241700 Sobic009G241700 Sobic010G107100--Sobic009G241700 Sobic006G230500 Sobic006G230500 Sobic010G107100--Sobic006G230500 Sobic010G102150 Sobic010G102150 Sobic010G163000--Sobic010G102150 Sobic010G163000--Sobic005G229700 Sobic010G163000--Sobic001G454100 Sobic003G146100 Sobic003G146100 Sobic010G163000--Sobic003G146100 Sobic010G163000--Sobic010G107100 Sobic010G163000--Sobic001G399100 Sobic005G109000 Sobic005G109000 Sobic010G163000--Sobic005G109000 Sobic001G195100 Sobic001G195100 Sobic010G163000--Sobic001G195100 Sobic004G158901 Sobic004G158901 Sobic010G163000--Sobic004G158901 Sobic003G265200 Sobic003G265200 Sobic005G229700--Sobic003G265200 Sobic001G422900 Sobic001G422900 Sobic005G229700--Sobic001G422900 Sobic002G245800 Sobic002G245800 Sobic005G229700--Sobic002G245800 Sobic001G037000 Sobic001G037000 Sobic005G229700--Sobic001G037000 Sobic005G229700--Sobic001G399100 Sobic003G181500 Sobic003G181500 Sobic005G229700--Sobic003G181500 Sobic002G055600 Sobic002G055600 Sobic005G229700--Sobic002G055600 Sobic009G070400 Sobic009G070400 Sobic005G229700--Sobic009G070400 Sobic002G333400 Sobic002G333400 Sobic005G229700--Sobic002G333400 Sobic003G230100 Sobic003G230100 Sobic006G216700--Sobic003G230100 Sobic004G169200 Sobic004G169200 Sobic006G216700--Sobic004G169200 Sobic001G449700 Sobic001G449700 Sobic006G216700--Sobic001G449700 Sobic002G395300 Sobic002G395300 Sobic006G216700--Sobic002G395300 Sobic001G100501 Sobic001G100501 Sobic006G216700--Sobic001G100501 Sobic004G097100 Sobic004G097100 Sobic006G216700--Sobic004G097100 Sobic003G037500 Sobic003G037500 Sobic006G216700--Sobic003G037500 Sobic004G219800 Sobic004G219800 Sobic006G216700--Sobic004G219800 Sobic003G349600 Sobic003G349600 Sobic006G216700--Sobic003G349600 Sobic005G018700 Sobic005G018700 Sobic003G192100--Sobic005G018700 Sobic004G101300 Sobic004G101300 Sobic003G192100--Sobic004G101300 Sobic003G192100--Sobic003G037500 Sobic007G155000 Sobic007G155000 Sobic003G192100--Sobic007G155000 Sobic002G245100 Sobic002G245100 Sobic003G192100--Sobic002G245100 Sobic001G231700 Sobic001G231700 Sobic003G192100--Sobic001G231700 Sobic001G050100 Sobic001G050100 Sobic003G192100--Sobic001G050100 Sobic001G367600 Sobic001G367600 Sobic003G192100--Sobic001G367600 Sobic004G340900 Sobic004G340900 Sobic003G192100--Sobic004G340900 Sobic003G285500--Sobic003G037500 Sobic009G221400 Sobic009G221400 Sobic003G285500--Sobic009G221400 Sobic002G353900 Sobic002G353900 Sobic003G285500--Sobic002G353900 Sobic003G285500--Sobic007G155000 Sobic003G041200 Sobic003G041200 Sobic003G285500--Sobic003G041200 Sobic003G285500--Sobic001G367600 Sobic003G285500--Sobic003G192100 Sobic003G285500--Sobic004G101300 Sobic003G285500--Sobic001G231700 Sobic008G136400 Sobic008G136400 Sobic006G158600--Sobic008G136400 Sobic002G192000 Sobic002G192000 Sobic006G158600--Sobic002G192000 Sobic002G140400 Sobic002G140400 Sobic006G158600--Sobic002G140400 Sobic006G158600--Sobic002G333400 Sobic006G056400 Sobic006G056400 Sobic006G158600--Sobic006G056400 Sobic001G038900 Sobic001G038900 Sobic006G158600--Sobic001G038900 Sobic001G423800 Sobic001G423800 Sobic006G158600--Sobic001G423800 Sobic002G336600 Sobic002G336600 Sobic006G158600--Sobic002G336600 Sobic004G243100 Sobic004G243100 Sobic006G158600--Sobic004G243100 Sobic001G401300 Sobic001G401300 Sobic003G215800--Sobic001G401300 Sobic005G137200 Sobic005G137200 Sobic003G215800--Sobic005G137200 Sobic002G090200 Sobic002G090200 Sobic003G215800--Sobic002G090200 Sobic003G215800--Sobic001G454100 Sobic008G034500 Sobic008G034500 Sobic003G215800--Sobic008G034500 Sobic001G466000 Sobic001G466000 Sobic003G215800--Sobic001G466000 Sobic003G215800--Sobic010G107100 Sobic003G215800--Sobic004G058000 Sobic010G004200 Sobic010G004200 Sobic003G215800--Sobic010G004200 Sobic001G281400 Sobic001G281400 Sobic008G059200--Sobic001G281400 Sobic009G177800 Sobic009G177800 Sobic008G059200--Sobic009G177800 Sobic010G149300 Sobic010G149300 Sobic008G059200--Sobic010G149300 Sobic008G059200--Sobic001G399100 Sobic006G173900 Sobic006G173900 Sobic008G059200--Sobic006G173900 Sobic004G187900 Sobic004G187900 Sobic008G059200--Sobic004G187900 Sobic008G059200--Sobic002G423300 Sobic002G211900 Sobic002G211900 Sobic008G059200--Sobic002G211900 Sobic001G288800 Sobic001G288800 Sobic008G059200--Sobic001G288800
Octagon: transcription factors


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