Gene annotation
Transcriptome id Sobic.001G157200.1
Synonym AAT1, Sb01g013690, CAT1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
amino acid permease family protein, putative, expressed
UniProt C5WR84
Pfam PF13906 PF13520
Panther DB PTHR11785 PTHR11785:SF230
NCBI CDD KOG1286; Amino acid transporters
KEGG Orthology K03294; basic amino acid/polyamine antiporter, APA family
Gene Ontology GO:0016020; membrane GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT4G21120 : amino acid transporter 1
RAP-DB (Rice) LOC_Os12g41890.1 : amino acid permease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022942 , Zm00025a007295 , Zm00025a025366
Brachypodium KQK14010 , KQK03264 , KQJ85804
Barley HORVU0Hr1G010210.2 , HORVU0Hr1G010210.1 , HORVU5Hr1G010470.1 , HORVU5Hr1G093090.1 , HORVU5Hr1G093090.2
Wheat TraesCS5D02G385125 , TraesCS5B02G046500 , TraesCS5D02G051400 , TraesCS5A02G042900 , TraesCS5A02G375600
Populus -


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cDNA sequences
Sobic.001G157200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G379866 - -
2 Sobic.002G222800 galactosyltransferase, putative, expressed -
3 Sobic.001G074200 LRR receptor-like protein kinase, putative, expressed -
4 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
5 Sobic.004G158901 - -
6 Sobic.004G058000 VQ domain containing protein, putative, expressed -
7 Sobic.007G125900 protein kinase domain containing protein, expressed -
8 Sobic.005G105300 expressed protein -
9 Sobic.004G067200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.003G000600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY1, expressed -
11 Sobic.003G146100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@methyltransferase, putative, expressed -
12 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
13 Sobic.001G385800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@No apical meristem protein, putative, expressed -
14 Sobic.003G019200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
15 Sobic.006G078400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
16 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
17 Sobic.001G386000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
18 Sobic.002G224100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
19 Sobic.004G182300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MLO domain containing protein, putative, expressed K08472: mlo protein
20 Sobic.002G355200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BTBN16 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -


Gene co-expression network
sample Sobic001G157200 Sobic001G157200 Sobic002G379866 Sobic002G379866 Sobic001G157200--Sobic002G379866 Sobic002G222800 Sobic002G222800 Sobic001G157200--Sobic002G222800 Sobic001G074200 Sobic001G074200 Sobic001G157200--Sobic001G074200 Sobic005G117400 Sobic005G117400 Sobic001G157200--Sobic005G117400 Sobic004G158901 Sobic004G158901 Sobic001G157200--Sobic004G158901 Sobic004G058000 Sobic004G058000 Sobic001G157200--Sobic004G058000 Sobic007G125900 Sobic007G125900 Sobic001G157200--Sobic007G125900 Sobic005G105300 Sobic005G105300 Sobic001G157200--Sobic005G105300 Sobic004G067200 Sobic004G067200 Sobic001G157200--Sobic004G067200 Sobic003G146100 Sobic003G146100 Sobic002G379866--Sobic003G146100 Sobic002G379866--Sobic001G157200 Sobic002G379866--Sobic002G222800 Sobic002G379866--Sobic001G074200 Sobic002G118600 Sobic002G118600 Sobic002G379866--Sobic002G118600 Sobic006G078400 Sobic006G078400 Sobic002G379866--Sobic006G078400 Sobic002G379866--Sobic004G158901 Sobic001G147200 Sobic001G147200 Sobic002G379866--Sobic001G147200 Sobic002G224100 Sobic002G224100 Sobic002G379866--Sobic002G224100 Sobic009G155200 Sobic009G155200 Sobic002G222800--Sobic009G155200 Sobic006G192500 Sobic006G192500 Sobic002G222800--Sobic006G192500 Sobic002G222800--Sobic001G157200 Sobic002G222800--Sobic002G379866 Sobic008G059200 Sobic008G059200 Sobic002G222800--Sobic008G059200 Sobic002G222800--Sobic006G078400 Sobic010G107100 Sobic010G107100 Sobic002G222800--Sobic010G107100 Sobic001G399100 Sobic001G399100 Sobic002G222800--Sobic001G399100 Sobic002G222800--Sobic004G158901 Sobic009G127000 Sobic009G127000 Sobic001G074200--Sobic009G127000 Sobic001G074200--Sobic007G125900 Sobic008G115500 Sobic008G115500 Sobic001G074200--Sobic008G115500 Sobic001G074200--Sobic002G379866 Sobic001G074200--Sobic001G147200 Sobic001G074200--Sobic001G157200 Sobic001G074200--Sobic005G117400 Sobic001G074200--Sobic002G118600 Sobic010G228000 Sobic010G228000 Sobic001G074200--Sobic010G228000 Sobic005G117400--Sobic004G158901 Sobic005G117400--Sobic007G125900 Sobic005G117400--Sobic004G058000 Sobic002G249000 Sobic002G249000 Sobic005G117400--Sobic002G249000 Sobic003G348400 Sobic003G348400 Sobic005G117400--Sobic003G348400 Sobic004G050000 Sobic004G050000 Sobic005G117400--Sobic004G050000 Sobic003G232900 Sobic003G232900 Sobic005G117400--Sobic003G232900 Sobic007G025700 Sobic007G025700 Sobic005G117400--Sobic007G025700 Sobic010G224200 Sobic010G224200 Sobic005G117400--Sobic010G224200 Sobic004G158901--Sobic002G224100 Sobic004G158901--Sobic005G117400 Sobic004G158901--Sobic004G058000 Sobic009G241700 Sobic009G241700 Sobic004G158901--Sobic009G241700 Sobic004G158901--Sobic006G192500 Sobic004G158901--Sobic001G399100 Sobic004G158901--Sobic002G379866 Sobic004G158901--Sobic007G025700 Sobic010G163000 Sobic010G163000 Sobic004G158901--Sobic010G163000 Sobic004G058000--Sobic010G107100 Sobic004G058000--Sobic001G399100 Sobic004G058000--Sobic005G117400 Sobic004G058000--Sobic010G224200 Sobic004G058000--Sobic009G241700 Sobic004G058000--Sobic004G158901 Sobic003G019200 Sobic003G019200 Sobic004G058000--Sobic003G019200 Sobic004G058000--Sobic004G050000 Sobic004G058000--Sobic002G249000 Sobic007G125900--Sobic003G348400 Sobic007G125900--Sobic005G117400 Sobic001G151800 Sobic001G151800 Sobic007G125900--Sobic001G151800 Sobic007G125900--Sobic001G074200 Sobic009G236200 Sobic009G236200 Sobic007G125900--Sobic009G236200 Sobic002G355200 Sobic002G355200 Sobic007G125900--Sobic002G355200 Sobic005G016800 Sobic005G016800 Sobic007G125900--Sobic005G016800 Sobic004G102400 Sobic004G102400 Sobic007G125900--Sobic004G102400 Sobic007G125900--Sobic009G127000 Sobic004G267500 Sobic004G267500 Sobic005G105300--Sobic004G267500 Sobic005G105300--Sobic004G158901 Sobic005G105300--Sobic002G379866 Sobic005G105300--Sobic005G117400 Sobic005G105300--Sobic002G224100 Sobic005G105300--Sobic007G025700 Sobic005G105300--Sobic001G074200 Sobic005G105300--Sobic001G157200 Sobic003G189200 Sobic003G189200 Sobic005G105300--Sobic003G189200 Sobic004G067200--Sobic001G157200 Sobic003G333501 Sobic003G333501 Sobic004G067200--Sobic003G333501 Sobic009G099500 Sobic009G099500 Sobic004G067200--Sobic009G099500 Sobic002G130700 Sobic002G130700 Sobic004G067200--Sobic002G130700 Sobic002G241400 Sobic002G241400 Sobic004G067200--Sobic002G241400 Sobic009G210600 Sobic009G210600 Sobic004G067200--Sobic009G210600 Sobic009G038401 Sobic009G038401 Sobic004G067200--Sobic009G038401 Sobic001G427200 Sobic001G427200 Sobic004G067200--Sobic001G427200 Sobic004G067200--Sobic002G222800
Octagon: transcription factors


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