Gene annotation
Transcriptome id Sobic.002G379866.1
Synonym -
Functional annotation -
UniProt A0A1W0W7I3
Pfam PF06645
Panther DB PTHR38354 PTHR38354:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0008233peptidase activity GO:0006465signal peptide processing GO:0005787signal peptidase complex


Orthologs (automatic annotation)
TAIR AT1G34640 : peptidases
RAP-DB (Rice) LOC_Os07g43010.1 : expressed protein
MaizeGDB (Corn) Zm00025a015238 , Zm00025a048794
Brachypodium PNT74744
Barley HORVU0Hr1G002920.3 , HORVU0Hr1G002920.2 , HORVU0Hr1G002920.1
Wheat TraesCS2A02G163200 , TraesCS2D02G170100 , TraesCS2B02G189000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G146100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@methyltransferase, putative, expressed -
2 Sobic.001G157200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
3 Sobic.002G222800 galactosyltransferase, putative, expressed -
4 Sobic.001G074200 LRR receptor-like protein kinase, putative, expressed -
5 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
6 Sobic.006G078400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
7 Sobic.004G158901 - -
8 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
9 Sobic.002G224100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
10 Sobic.003G019200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.010G175200 low-affinity cation transporter, putative, expressed -
12 Sobic.002G374100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
13 Sobic.003G146000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@methyltransferase, putative, expressed -
14 Sobic.004G267500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
15 Sobic.001G399100 peroxisomal biogenesis factor 11, putative, expressed -
16 Sobic.005G105300 expressed protein -
17 Sobic.009G142200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@No apical meristem protein, putative, expressed -
18 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
19 Sobic.010G163000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
20 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -


Gene co-expression network
sample Sobic002G379866 Sobic002G379866 Sobic003G146100 Sobic003G146100 Sobic002G379866--Sobic003G146100 Sobic001G157200 Sobic001G157200 Sobic002G379866--Sobic001G157200 Sobic002G222800 Sobic002G222800 Sobic002G379866--Sobic002G222800 Sobic001G074200 Sobic001G074200 Sobic002G379866--Sobic001G074200 Sobic002G118600 Sobic002G118600 Sobic002G379866--Sobic002G118600 Sobic006G078400 Sobic006G078400 Sobic002G379866--Sobic006G078400 Sobic004G158901 Sobic004G158901 Sobic002G379866--Sobic004G158901 Sobic001G147200 Sobic001G147200 Sobic002G379866--Sobic001G147200 Sobic002G224100 Sobic002G224100 Sobic002G379866--Sobic002G224100 Sobic003G146100--Sobic002G379866 Sobic010G163000 Sobic010G163000 Sobic003G146100--Sobic010G163000 Sobic003G019200 Sobic003G019200 Sobic003G146100--Sobic003G019200 Sobic001G399100 Sobic001G399100 Sobic003G146100--Sobic001G399100 Sobic005G109000 Sobic005G109000 Sobic003G146100--Sobic005G109000 Sobic002G232800 Sobic002G232800 Sobic003G146100--Sobic002G232800 Sobic003G341100 Sobic003G341100 Sobic003G146100--Sobic003G341100 Sobic006G192500 Sobic006G192500 Sobic003G146100--Sobic006G192500 Sobic003G146100--Sobic002G118600 Sobic001G157200--Sobic002G379866 Sobic001G157200--Sobic002G222800 Sobic001G157200--Sobic001G074200 Sobic005G117400 Sobic005G117400 Sobic001G157200--Sobic005G117400 Sobic001G157200--Sobic004G158901 Sobic004G058000 Sobic004G058000 Sobic001G157200--Sobic004G058000 Sobic007G125900 Sobic007G125900 Sobic001G157200--Sobic007G125900 Sobic005G105300 Sobic005G105300 Sobic001G157200--Sobic005G105300 Sobic004G067200 Sobic004G067200 Sobic001G157200--Sobic004G067200 Sobic009G155200 Sobic009G155200 Sobic002G222800--Sobic009G155200 Sobic002G222800--Sobic006G192500 Sobic002G222800--Sobic001G157200 Sobic002G222800--Sobic002G379866 Sobic008G059200 Sobic008G059200 Sobic002G222800--Sobic008G059200 Sobic002G222800--Sobic006G078400 Sobic010G107100 Sobic010G107100 Sobic002G222800--Sobic010G107100 Sobic002G222800--Sobic001G399100 Sobic002G222800--Sobic004G158901 Sobic009G127000 Sobic009G127000 Sobic001G074200--Sobic009G127000 Sobic001G074200--Sobic007G125900 Sobic008G115500 Sobic008G115500 Sobic001G074200--Sobic008G115500 Sobic001G074200--Sobic002G379866 Sobic001G074200--Sobic001G147200 Sobic001G074200--Sobic001G157200 Sobic001G074200--Sobic005G117400 Sobic001G074200--Sobic002G118600 Sobic010G228000 Sobic010G228000 Sobic001G074200--Sobic010G228000 Sobic002G118600--Sobic001G147200 Sobic001G341600 Sobic001G341600 Sobic002G118600--Sobic001G341600 Sobic002G118600--Sobic003G341100 Sobic002G118600--Sobic010G228000 Sobic002G374100 Sobic002G374100 Sobic002G118600--Sobic002G374100 Sobic001G290400 Sobic001G290400 Sobic002G118600--Sobic001G290400 Sobic007G011000 Sobic007G011000 Sobic002G118600--Sobic007G011000 Sobic001G538866 Sobic001G538866 Sobic002G118600--Sobic001G538866 Sobic006G228300 Sobic006G228300 Sobic002G118600--Sobic006G228300 Sobic009G044400 Sobic009G044400 Sobic006G078400--Sobic009G044400 Sobic003G429300 Sobic003G429300 Sobic006G078400--Sobic003G429300 Sobic003G363200 Sobic003G363200 Sobic006G078400--Sobic003G363200 Sobic006G078400--Sobic001G290400 Sobic006G078400--Sobic002G118600 Sobic010G175200 Sobic010G175200 Sobic006G078400--Sobic010G175200 Sobic006G078400--Sobic001G341600 Sobic006G078400--Sobic001G147200 Sobic006G078400--Sobic006G228300 Sobic004G158901--Sobic002G224100 Sobic004G158901--Sobic005G117400 Sobic004G158901--Sobic004G058000 Sobic009G241700 Sobic009G241700 Sobic004G158901--Sobic009G241700 Sobic004G158901--Sobic006G192500 Sobic004G158901--Sobic001G399100 Sobic004G158901--Sobic002G379866 Sobic007G025700 Sobic007G025700 Sobic004G158901--Sobic007G025700 Sobic004G158901--Sobic010G163000 Sobic001G147200--Sobic003G019200 Sobic010G246000 Sobic010G246000 Sobic001G147200--Sobic010G246000 Sobic001G147200--Sobic002G118600 Sobic010G204300 Sobic010G204300 Sobic001G147200--Sobic010G204300 Sobic001G147200--Sobic006G228300 Sobic001G147200--Sobic001G399100 Sobic001G147200--Sobic001G538866 Sobic001G147200--Sobic002G374100 Sobic006G263100 Sobic006G263100 Sobic001G147200--Sobic006G263100 Sobic002G224100--Sobic004G158901 Sobic002G224100--Sobic003G429300 Sobic002G224100--Sobic007G025700 Sobic004G307000 Sobic004G307000 Sobic002G224100--Sobic004G307000 Sobic003G189200 Sobic003G189200 Sobic002G224100--Sobic003G189200 Sobic002G224100--Sobic005G117400 Sobic002G224100--Sobic002G379866 Sobic007G171000 Sobic007G171000 Sobic002G224100--Sobic007G171000 Sobic008G111100 Sobic008G111100 Sobic002G224100--Sobic008G111100
Octagon: transcription factors


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