Gene annotation
Transcriptome id Sobic.004G067200.1
Synonym Sb04g005630
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
expressed protein
UniProt C5XWX0
Pfam -
Panther DB PTHR33168 PTHR33168:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01430 : -
RAP-DB (Rice) LOC_Os06g43810.1 : expressed protein
MaizeGDB (Corn) Zm00025a042059 , Zm00025a051368 , Zm00025a022015 , Zm00025a019272
Brachypodium KQK16803 , KQJ93692
Barley HORVU7Hr1G038860.2 , HORVU7Hr1G038860.1 , HORVU7Hr1G038860.3 , HORVU7Hr1G038860.4 , HORVU6Hr1G076130.1 , HORVU6Hr1G028590.1 , HORVU6Hr1G076130.3 , HORVU6Hr1G076130.2 , HORVU6Hr1G076130.5 , HORVU6Hr1G076130.4
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G067200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G157200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
2 Sobic.003G333501 - -
3 Sobic.009G099500 expressed protein -
4 Sobic.002G130700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed -
5 Sobic.002G241400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.009G210600 GTPase-activating protein, putative, expressed -
7 Sobic.009G038401 - -
8 Sobic.001G427200 josephin, putative, expressed K15235: josephin
9 Sobic.002G222800 galactosyltransferase, putative, expressed -
10 Sobic.004G158901 - -
11 Sobic.003G248400 WRKY16, expressed -
12 Sobic.002G109400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LTPL40 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.001G393800 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
14 Sobic.001G224700 expressed protein -
15 Sobic.001G454100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
16 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
17 Sobic.001G156300 POEI27 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
18 Sobic.004G255200 CSLE2 - cellulose synthase-like family E, expressed -
19 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
20 Sobic.003G333400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G067200 Sobic004G067200 Sobic001G157200 Sobic001G157200 Sobic004G067200--Sobic001G157200 Sobic003G333501 Sobic003G333501 Sobic004G067200--Sobic003G333501 Sobic009G099500 Sobic009G099500 Sobic004G067200--Sobic009G099500 Sobic002G130700 Sobic002G130700 Sobic004G067200--Sobic002G130700 Sobic002G241400 Sobic002G241400 Sobic004G067200--Sobic002G241400 Sobic009G210600 Sobic009G210600 Sobic004G067200--Sobic009G210600 Sobic009G038401 Sobic009G038401 Sobic004G067200--Sobic009G038401 Sobic001G427200 Sobic001G427200 Sobic004G067200--Sobic001G427200 Sobic002G222800 Sobic002G222800 Sobic004G067200--Sobic002G222800 Sobic002G379866 Sobic002G379866 Sobic001G157200--Sobic002G379866 Sobic001G157200--Sobic002G222800 Sobic001G074200 Sobic001G074200 Sobic001G157200--Sobic001G074200 Sobic005G117400 Sobic005G117400 Sobic001G157200--Sobic005G117400 Sobic004G158901 Sobic004G158901 Sobic001G157200--Sobic004G158901 Sobic004G058000 Sobic004G058000 Sobic001G157200--Sobic004G058000 Sobic007G125900 Sobic007G125900 Sobic001G157200--Sobic007G125900 Sobic005G105300 Sobic005G105300 Sobic001G157200--Sobic005G105300 Sobic001G157200--Sobic004G067200 Sobic003G333400 Sobic003G333400 Sobic003G333501--Sobic003G333400 Sobic002G329100 Sobic002G329100 Sobic003G333501--Sobic002G329100 Sobic003G333501--Sobic004G067200 Sobic003G333501--Sobic009G210600 Sobic001G393800 Sobic001G393800 Sobic003G333501--Sobic001G393800 Sobic004G276100 Sobic004G276100 Sobic003G333501--Sobic004G276100 Sobic007G195100 Sobic007G195100 Sobic003G333501--Sobic007G195100 Sobic001G409200 Sobic001G409200 Sobic003G333501--Sobic001G409200 Sobic003G333501--Sobic009G038401 Sobic009G099500--Sobic001G393800 Sobic005G150800 Sobic005G150800 Sobic009G099500--Sobic005G150800 Sobic004G067100 Sobic004G067100 Sobic009G099500--Sobic004G067100 Sobic003G077900 Sobic003G077900 Sobic009G099500--Sobic003G077900 Sobic004G234900 Sobic004G234900 Sobic009G099500--Sobic004G234900 Sobic009G099500--Sobic001G427200 Sobic007G007000 Sobic007G007000 Sobic009G099500--Sobic007G007000 Sobic002G251700 Sobic002G251700 Sobic009G099500--Sobic002G251700 Sobic001G057800 Sobic001G057800 Sobic009G099500--Sobic001G057800 Sobic009G034800 Sobic009G034800 Sobic002G130700--Sobic009G034800 Sobic004G275200 Sobic004G275200 Sobic002G130700--Sobic004G275200 Sobic005G129400 Sobic005G129400 Sobic002G130700--Sobic005G129400 Sobic004G174100 Sobic004G174100 Sobic002G130700--Sobic004G174100 Sobic006G242000 Sobic006G242000 Sobic002G130700--Sobic006G242000 Sobic002G027700 Sobic002G027700 Sobic002G130700--Sobic002G027700 Sobic009G245700 Sobic009G245700 Sobic002G130700--Sobic009G245700 Sobic002G130700--Sobic001G427200 Sobic002G130700--Sobic002G241400 Sobic008G094700 Sobic008G094700 Sobic002G241400--Sobic008G094700 Sobic002G241400--Sobic002G130700 Sobic005G217200 Sobic005G217200 Sobic002G241400--Sobic005G217200 Sobic002G241400--Sobic004G067200 Sobic008G074700 Sobic008G074700 Sobic002G241400--Sobic008G074700 Sobic001G236200 Sobic001G236200 Sobic002G241400--Sobic001G236200 Sobic001G385800 Sobic001G385800 Sobic002G241400--Sobic001G385800 Sobic001G180900 Sobic001G180900 Sobic002G241400--Sobic001G180900 Sobic005G091600 Sobic005G091600 Sobic002G241400--Sobic005G091600 Sobic004G255200 Sobic004G255200 Sobic009G210600--Sobic004G255200 Sobic010G210200 Sobic010G210200 Sobic009G210600--Sobic010G210200 Sobic005G086100 Sobic005G086100 Sobic009G210600--Sobic005G086100 Sobic002G087800 Sobic002G087800 Sobic009G210600--Sobic002G087800 Sobic009G167700 Sobic009G167700 Sobic009G210600--Sobic009G167700 Sobic003G354400 Sobic003G354400 Sobic009G210600--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G210600--Sobic001G334600 Sobic004G225100 Sobic004G225100 Sobic009G210600--Sobic004G225100 Sobic004G345800 Sobic004G345800 Sobic009G210600--Sobic004G345800 Sobic002G249000 Sobic002G249000 Sobic009G038401--Sobic002G249000 Sobic006G140200 Sobic006G140200 Sobic009G038401--Sobic006G140200 Sobic010G176700 Sobic010G176700 Sobic009G038401--Sobic010G176700 Sobic001G401300 Sobic001G401300 Sobic009G038401--Sobic001G401300 Sobic008G059200 Sobic008G059200 Sobic009G038401--Sobic008G059200 Sobic003G075500 Sobic003G075500 Sobic009G038401--Sobic003G075500 Sobic009G038401--Sobic002G329100 Sobic001G066000 Sobic001G066000 Sobic009G038401--Sobic001G066000 Sobic009G043600 Sobic009G043600 Sobic009G038401--Sobic009G043600 Sobic003G436300 Sobic003G436300 Sobic001G427200--Sobic003G436300 Sobic003G217400 Sobic003G217400 Sobic001G427200--Sobic003G217400 Sobic001G427200--Sobic004G174100 Sobic001G427200--Sobic003G077900 Sobic001G427200--Sobic002G251700 Sobic010G090900 Sobic010G090900 Sobic001G427200--Sobic010G090900 Sobic003G116900 Sobic003G116900 Sobic001G427200--Sobic003G116900 Sobic005G044800 Sobic005G044800 Sobic001G427200--Sobic005G044800 Sobic003G299000 Sobic003G299000 Sobic001G427200--Sobic003G299000 Sobic009G155200 Sobic009G155200 Sobic002G222800--Sobic009G155200 Sobic006G192500 Sobic006G192500 Sobic002G222800--Sobic006G192500 Sobic002G222800--Sobic001G157200 Sobic002G222800--Sobic002G379866 Sobic002G222800--Sobic008G059200 Sobic006G078400 Sobic006G078400 Sobic002G222800--Sobic006G078400 Sobic010G107100 Sobic010G107100 Sobic002G222800--Sobic010G107100 Sobic001G399100 Sobic001G399100 Sobic002G222800--Sobic001G399100 Sobic002G222800--Sobic004G158901
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.