Gene annotation
Transcriptome id Sobic.010G210200.1
Synonym Sb10g025690
Functional annotation transmembrane 9 superfamily member, putative, expressed
UniProt C5Z6U5
Pfam PF02990
Panther DB PTHR10766:SF57 PTHR10766
NCBI CDD -
KEGG Orthology K17086; transmembrane 9 superfamily member 2/4
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G10840 : Endomembrane protein 70 protein family
RAP-DB (Rice) LOC_Os06g44140.1 : transmembrane 9 superfamily member, putative, expressed
MaizeGDB (Corn) Zm00025a054644 , Zm00025a047903 , Zm00025a042031 , Zm00025a014550 , Zm00025a051615
Brachypodium KQK16842
Barley HORVU5Hr1G088680.3 , HORVU5Hr1G088680.13 , HORVU5Hr1G088680.12 , HORVU5Hr1G088680.15 , HORVU5Hr1G088680.14 , HORVU5Hr1G088680.9 , HORVU5Hr1G088680.8 , HORVU5Hr1G088680.7 , HORVU5Hr1G088680.6 , HORVU5Hr1G088680.1 , HORVU5Hr1G088680.11 , HORVU5Hr1G088680.10 , HORVU5Hr1G088680.16
Wheat TraesCS5A02G359800 , TraesCS5A02G359800 , TraesCS5D02G369000 , TraesCS5B02G362100 , TraesCS5B02G362100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G132500 CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
2 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
3 Sobic.005G215900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
4 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
5 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
6 Sobic.003G442500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CESA2 - cellulose synthase, expressed -
7 Sobic.005G217200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.009G210600 GTPase-activating protein, putative, expressed -
9 Sobic.003G061400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@basic helix-loop-helix, putative, expressed -
10 Sobic.004G333200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.003G244600 similar to PRm 3(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
12 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
13 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
14 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
15 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
16 Sobic.005G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CRP11 - Cysteine-rich family protein precursor, expressed -
17 Sobic.003G111300 PIII1 - Proteinase inhibitor II family protein precursor, expressed -
18 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
19 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
20 Sobic.008G189200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -


Gene co-expression network
sample Sobic010G210200 Sobic010G210200 Sobic006G132500 Sobic006G132500 Sobic010G210200--Sobic006G132500 Sobic001G132000 Sobic001G132000 Sobic010G210200--Sobic001G132000 Sobic005G215900 Sobic005G215900 Sobic010G210200--Sobic005G215900 Sobic009G167700 Sobic009G167700 Sobic010G210200--Sobic009G167700 Sobic003G061800 Sobic003G061800 Sobic010G210200--Sobic003G061800 Sobic003G442500 Sobic003G442500 Sobic010G210200--Sobic003G442500 Sobic005G217200 Sobic005G217200 Sobic010G210200--Sobic005G217200 Sobic009G210600 Sobic009G210600 Sobic010G210200--Sobic009G210600 Sobic003G061400 Sobic003G061400 Sobic010G210200--Sobic003G061400 Sobic006G132500--Sobic010G210200 Sobic008G182300 Sobic008G182300 Sobic006G132500--Sobic008G182300 Sobic003G244600 Sobic003G244600 Sobic006G132500--Sobic003G244600 Sobic005G169400 Sobic005G169400 Sobic006G132500--Sobic005G169400 Sobic001G145600 Sobic001G145600 Sobic006G132500--Sobic001G145600 Sobic003G111300 Sobic003G111300 Sobic006G132500--Sobic003G111300 Sobic006G132500--Sobic005G215900 Sobic002G023300 Sobic002G023300 Sobic006G132500--Sobic002G023300 Sobic001G145700 Sobic001G145700 Sobic006G132500--Sobic001G145700 Sobic006G119200 Sobic006G119200 Sobic001G132000--Sobic006G119200 Sobic001G132000--Sobic009G167700 Sobic001G132000--Sobic010G210200 Sobic005G024900 Sobic005G024900 Sobic001G132000--Sobic005G024900 Sobic004G101900 Sobic004G101900 Sobic001G132000--Sobic004G101900 Sobic001G132000--Sobic003G061400 Sobic007G219900 Sobic007G219900 Sobic001G132000--Sobic007G219900 Sobic005G079900 Sobic005G079900 Sobic001G132000--Sobic005G079900 Sobic002G304000 Sobic002G304000 Sobic001G132000--Sobic002G304000 Sobic005G152100 Sobic005G152100 Sobic005G215900--Sobic005G152100 Sobic004G236600 Sobic004G236600 Sobic005G215900--Sobic004G236600 Sobic002G381300 Sobic002G381300 Sobic005G215900--Sobic002G381300 Sobic005G216000 Sobic005G216000 Sobic005G215900--Sobic005G216000 Sobic001G488500 Sobic001G488500 Sobic005G215900--Sobic001G488500 Sobic008G024400 Sobic008G024400 Sobic005G215900--Sobic008G024400 Sobic005G215900--Sobic002G304000 Sobic003G149200 Sobic003G149200 Sobic005G215900--Sobic003G149200 Sobic001G249300 Sobic001G249300 Sobic005G215900--Sobic001G249300 Sobic002G244100 Sobic002G244100 Sobic009G167700--Sobic002G244100 Sobic004G341200 Sobic004G341200 Sobic009G167700--Sobic004G341200 Sobic004G102400 Sobic004G102400 Sobic009G167700--Sobic004G102400 Sobic001G386400 Sobic001G386400 Sobic009G167700--Sobic001G386400 Sobic010G016400 Sobic010G016400 Sobic009G167700--Sobic010G016400 Sobic001G089800 Sobic001G089800 Sobic009G167700--Sobic001G089800 Sobic003G354400 Sobic003G354400 Sobic009G167700--Sobic003G354400 Sobic009G167700--Sobic001G132000 Sobic009G167700--Sobic006G119200 Sobic009G057300 Sobic009G057300 Sobic003G061800--Sobic009G057300 Sobic004G345800 Sobic004G345800 Sobic003G061800--Sobic004G345800 Sobic003G061800--Sobic003G354400 Sobic001G474500 Sobic001G474500 Sobic003G061800--Sobic001G474500 Sobic009G126900 Sobic009G126900 Sobic003G061800--Sobic009G126900 Sobic003G388251 Sobic003G388251 Sobic003G061800--Sobic003G388251 Sobic007G068100 Sobic007G068100 Sobic003G061800--Sobic007G068100 Sobic003G329400 Sobic003G329400 Sobic003G061800--Sobic003G329400 Sobic003G061800--Sobic004G101900 Sobic003G442500--Sobic003G061400 Sobic003G442500--Sobic010G210200 Sobic010G176700 Sobic010G176700 Sobic003G442500--Sobic010G176700 Sobic004G333200 Sobic004G333200 Sobic003G442500--Sobic004G333200 Sobic002G113100 Sobic002G113100 Sobic003G442500--Sobic002G113100 Sobic003G442500--Sobic003G061800 Sobic001G409200 Sobic001G409200 Sobic003G442500--Sobic001G409200 Sobic003G442500--Sobic003G111300 Sobic001G010400 Sobic001G010400 Sobic003G442500--Sobic001G010400 Sobic008G189200 Sobic008G189200 Sobic005G217200--Sobic008G189200 Sobic005G217200--Sobic010G210200 Sobic003G363100 Sobic003G363100 Sobic005G217200--Sobic003G363100 Sobic005G217200--Sobic009G126900 Sobic004G237600 Sobic004G237600 Sobic005G217200--Sobic004G237600 Sobic003G276000 Sobic003G276000 Sobic005G217200--Sobic003G276000 Sobic005G217200--Sobic003G244600 Sobic010G162900 Sobic010G162900 Sobic005G217200--Sobic010G162900 Sobic002G172900 Sobic002G172900 Sobic005G217200--Sobic002G172900 Sobic004G255200 Sobic004G255200 Sobic009G210600--Sobic004G255200 Sobic009G210600--Sobic010G210200 Sobic005G086100 Sobic005G086100 Sobic009G210600--Sobic005G086100 Sobic002G087800 Sobic002G087800 Sobic009G210600--Sobic002G087800 Sobic009G210600--Sobic009G167700 Sobic009G210600--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G210600--Sobic001G334600 Sobic004G225100 Sobic004G225100 Sobic009G210600--Sobic004G225100 Sobic009G210600--Sobic004G345800 Sobic003G061400--Sobic004G333200 Sobic003G061400--Sobic010G176700 Sobic003G061400--Sobic003G442500 Sobic003G061400--Sobic001G132000 Sobic003G061400--Sobic005G215900 Sobic003G061400--Sobic010G210200 Sobic003G061400--Sobic005G024900 Sobic009G016800 Sobic009G016800 Sobic003G061400--Sobic009G016800 Sobic006G127100 Sobic006G127100 Sobic003G061400--Sobic006G127100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.