Gene annotation
Transcriptome id Sobic.003G061800.2,Sobic.003G061800.1
Synonym ATG6, ATSCX, ACX4
Functional annotation glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
UniProt A0A1B6Q1M9
Pfam PF02770 PF00441 PF02771
Panther DB PTHR10909 PTHR10909:SF331
NCBI CDD -
KEGG Orthology K00232; E1.3.3.6, ACOX1, acyl-CoA oxidase
Gene Ontology GO:0003995; acyl-CoA dehydrogenase activity GO:0016627oxidoreductase activity, acting on the CH-CH group of donors GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G51840 : acyl-CoA oxidase 4
RAP-DB (Rice) LOC_Os01g06600.1 : glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a023360 , Zm00025a042917
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
2 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
3 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
4 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
5 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
6 Sobic.003G388251 - K01166: ribonuclease T2
7 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
8 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
9 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
10 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
11 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
12 Sobic.001G334600 OsFBX95 - F-box domain containing protein, expressed -
13 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)
14 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
15 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
16 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
17 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
18 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
19 Sobic.001G130000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
20 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic003G061800 Sobic003G061800 Sobic009G057300 Sobic009G057300 Sobic003G061800--Sobic009G057300 Sobic004G345800 Sobic004G345800 Sobic003G061800--Sobic004G345800 Sobic003G354400 Sobic003G354400 Sobic003G061800--Sobic003G354400 Sobic001G474500 Sobic001G474500 Sobic003G061800--Sobic001G474500 Sobic009G126900 Sobic009G126900 Sobic003G061800--Sobic009G126900 Sobic003G388251 Sobic003G388251 Sobic003G061800--Sobic003G388251 Sobic007G068100 Sobic007G068100 Sobic003G061800--Sobic007G068100 Sobic003G329400 Sobic003G329400 Sobic003G061800--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic003G061800--Sobic004G101900 Sobic009G057300--Sobic003G061800 Sobic009G057300--Sobic001G474500 Sobic009G057300--Sobic007G068100 Sobic001G325200 Sobic001G325200 Sobic009G057300--Sobic001G325200 Sobic009G057300--Sobic003G388251 Sobic009G057300--Sobic003G329400 Sobic009G057300--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G057300--Sobic001G334600 Sobic001G322700 Sobic001G322700 Sobic009G057300--Sobic001G322700 Sobic004G345800--Sobic003G061800 Sobic004G345800--Sobic001G474500 Sobic003G184900 Sobic003G184900 Sobic004G345800--Sobic003G184900 Sobic004G345800--Sobic003G388251 Sobic008G079300 Sobic008G079300 Sobic004G345800--Sobic008G079300 Sobic004G345800--Sobic007G068100 Sobic004G345800--Sobic009G057300 Sobic006G127100 Sobic006G127100 Sobic004G345800--Sobic006G127100 Sobic004G321800 Sobic004G321800 Sobic004G345800--Sobic004G321800 Sobic003G354400--Sobic003G061800 Sobic003G354400--Sobic003G329400 Sobic003G354400--Sobic009G057300 Sobic010G130200 Sobic010G130200 Sobic003G354400--Sobic010G130200 Sobic008G144401 Sobic008G144401 Sobic003G354400--Sobic008G144401 Sobic001G120300 Sobic001G120300 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic008G147700 Sobic008G147700 Sobic003G354400--Sobic008G147700 Sobic003G354400--Sobic009G126900 Sobic001G474500--Sobic007G068100 Sobic001G474500--Sobic001G325200 Sobic001G474500--Sobic009G057300 Sobic004G060900 Sobic004G060900 Sobic001G474500--Sobic004G060900 Sobic001G474500--Sobic003G388251 Sobic001G474500--Sobic004G321800 Sobic003G428400 Sobic003G428400 Sobic001G474500--Sobic003G428400 Sobic001G130000 Sobic001G130000 Sobic001G474500--Sobic001G130000 Sobic009G034700 Sobic009G034700 Sobic001G474500--Sobic009G034700 Sobic010G043400 Sobic010G043400 Sobic009G126900--Sobic010G043400 Sobic002G270500 Sobic002G270500 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic006G271200 Sobic006G271200 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic004G124200 Sobic004G124200 Sobic009G126900--Sobic004G124200 Sobic003G005600 Sobic003G005600 Sobic009G126900--Sobic003G005600 Sobic009G126900--Sobic003G329400 Sobic009G126900--Sobic004G101900 Sobic003G388251--Sobic004G124200 Sobic003G388251--Sobic007G068100 Sobic003G388251--Sobic001G325200 Sobic003G388251--Sobic001G474500 Sobic003G388251--Sobic004G101900 Sobic005G178100 Sobic005G178100 Sobic003G388251--Sobic005G178100 Sobic003G388251--Sobic009G034700 Sobic003G388251--Sobic009G057300 Sobic001G015500 Sobic001G015500 Sobic003G388251--Sobic001G015500 Sobic007G068100--Sobic001G325200 Sobic007G068100--Sobic001G474500 Sobic007G068100--Sobic003G388251 Sobic003G148800 Sobic003G148800 Sobic007G068100--Sobic003G148800 Sobic007G068100--Sobic009G057300 Sobic007G068100--Sobic004G101900 Sobic007G068100--Sobic003G428400 Sobic009G226300 Sobic009G226300 Sobic007G068100--Sobic009G226300 Sobic007G068100--Sobic004G321800 Sobic003G329400--Sobic001G322700 Sobic008G062200 Sobic008G062200 Sobic003G329400--Sobic008G062200 Sobic003G329400--Sobic001G325200 Sobic010G107000 Sobic010G107000 Sobic003G329400--Sobic010G107000 Sobic002G304000 Sobic002G304000 Sobic003G329400--Sobic002G304000 Sobic003G329400--Sobic007G068100 Sobic003G329400--Sobic009G226300 Sobic003G329400--Sobic003G148800 Sobic003G329400--Sobic003G354400 Sobic004G101900--Sobic002G304000 Sobic002G215700 Sobic002G215700 Sobic004G101900--Sobic002G215700 Sobic004G101900--Sobic001G325200 Sobic004G101900--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic004G101900--Sobic009G054500 Sobic004G101900--Sobic008G062200 Sobic004G101900--Sobic003G148800 Sobic004G101900--Sobic004G124200 Sobic004G101900--Sobic001G015500
Octagon: transcription factors


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