Gene annotation
Transcriptome id Sobic.003G354400.1
Synonym ATACX3, Sb03g039670, ACX3
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
acyl-coenzyme A oxidase, putative, expressed
UniProt C5XPR4
Pfam PF00441 PF02770 PF01756
Panther DB PTHR10909 PTHR10909:SF11
NCBI CDD -
KEGG Orthology K00232; E1.3.3.6, ACOX1, acyl-CoA oxidase
Gene Ontology GO:0016627; oxidoreductase activity, acting on the CH-CH group of donors GO:0003995acyl-CoA dehydrogenase activity GO:0006635fatty acid beta-oxidation GO:0005777peroxisome GO:0003997acyl-CoA oxidase activity


Orthologs (automatic annotation)
TAIR AT1G06290 : acyl-CoA oxidase 3
RAP-DB (Rice) LOC_Os06g24704.1 : acyl-coenzyme A oxidase, putative, expressed
MaizeGDB (Corn) Zm00025a026870
Brachypodium KQJ96360
Barley HORVU7Hr1G083490.9 , HORVU7Hr1G083490.8 , HORVU7Hr1G083490.3 , HORVU7Hr1G083490.2 , HORVU7Hr1G083490.1 , HORVU7Hr1G083490.7 , HORVU7Hr1G083490.6 , HORVU7Hr1G083490.5 , HORVU7Hr1G083490.4
Wheat TraesCS7B02G250400 , TraesCS7B02G250400 , TraesCS7D02G346400 , TraesCS7A02G339100 , TraesCS7B02G250400 , TraesCS7D02G346400
Populus -


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cDNA sequences
Sobic.003G354400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
2 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
3 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
4 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
5 Sobic.008G144401 - -
6 Sobic.001G120300 phytanoyl-CoA dioxygenase, putative, expressed K00477: phytanoyl-CoA hydroxylase
7 Sobic.001G111150 - K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
8 Sobic.008G147700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K14169: CTU2, cytoplasmic tRNA 2-thiolation protein 2
9 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
10 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)
11 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
12 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
13 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
14 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
15 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
16 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
17 Sobic.001G334600 OsFBX95 - F-box domain containing protein, expressed -
18 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
19 Sobic.006G049300 nitrate-induced NOI protein, expressed K13456: RPM1-interacting protein 4
20 Sobic.003G388251 - K01166: ribonuclease T2


Gene co-expression network
sample Sobic003G354400 Sobic003G354400 Sobic003G061800 Sobic003G061800 Sobic003G354400--Sobic003G061800 Sobic003G329400 Sobic003G329400 Sobic003G354400--Sobic003G329400 Sobic009G057300 Sobic009G057300 Sobic003G354400--Sobic009G057300 Sobic010G130200 Sobic010G130200 Sobic003G354400--Sobic010G130200 Sobic008G144401 Sobic008G144401 Sobic003G354400--Sobic008G144401 Sobic001G120300 Sobic001G120300 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic008G147700 Sobic008G147700 Sobic003G354400--Sobic008G147700 Sobic009G126900 Sobic009G126900 Sobic003G354400--Sobic009G126900 Sobic003G061800--Sobic009G057300 Sobic004G345800 Sobic004G345800 Sobic003G061800--Sobic004G345800 Sobic003G061800--Sobic003G354400 Sobic001G474500 Sobic001G474500 Sobic003G061800--Sobic001G474500 Sobic003G061800--Sobic009G126900 Sobic003G388251 Sobic003G388251 Sobic003G061800--Sobic003G388251 Sobic007G068100 Sobic007G068100 Sobic003G061800--Sobic007G068100 Sobic003G061800--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic003G061800--Sobic004G101900 Sobic001G322700 Sobic001G322700 Sobic003G329400--Sobic001G322700 Sobic008G062200 Sobic008G062200 Sobic003G329400--Sobic008G062200 Sobic001G325200 Sobic001G325200 Sobic003G329400--Sobic001G325200 Sobic010G107000 Sobic010G107000 Sobic003G329400--Sobic010G107000 Sobic002G304000 Sobic002G304000 Sobic003G329400--Sobic002G304000 Sobic003G329400--Sobic007G068100 Sobic009G226300 Sobic009G226300 Sobic003G329400--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic003G329400--Sobic003G148800 Sobic003G329400--Sobic003G354400 Sobic009G057300--Sobic003G061800 Sobic009G057300--Sobic001G474500 Sobic009G057300--Sobic007G068100 Sobic009G057300--Sobic001G325200 Sobic009G057300--Sobic003G388251 Sobic009G057300--Sobic003G329400 Sobic009G057300--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G057300--Sobic001G334600 Sobic009G057300--Sobic001G322700 Sobic006G083600 Sobic006G083600 Sobic010G130200--Sobic006G083600 Sobic010G130200--Sobic001G111150 Sobic003G305200 Sobic003G305200 Sobic010G130200--Sobic003G305200 Sobic006G271200 Sobic006G271200 Sobic010G130200--Sobic006G271200 Sobic002G270500 Sobic002G270500 Sobic010G130200--Sobic002G270500 Sobic010G264200 Sobic010G264200 Sobic010G130200--Sobic010G264200 Sobic010G130200--Sobic003G354400 Sobic007G024700 Sobic007G024700 Sobic010G130200--Sobic007G024700 Sobic005G203800 Sobic005G203800 Sobic010G130200--Sobic005G203800 Sobic008G144401--Sobic003G354400 Sobic009G177400 Sobic009G177400 Sobic008G144401--Sobic009G177400 Sobic008G144401--Sobic003G329400 Sobic008G144401--Sobic003G061800 Sobic003G005800 Sobic003G005800 Sobic008G144401--Sobic003G005800 Sobic008G144401--Sobic008G147700 Sobic008G144401--Sobic010G130200 Sobic010G188400 Sobic010G188400 Sobic008G144401--Sobic010G188400 Sobic003G241000 Sobic003G241000 Sobic008G144401--Sobic003G241000 Sobic001G120300--Sobic003G354400 Sobic001G394600 Sobic001G394600 Sobic001G120300--Sobic001G394600 Sobic004G127700 Sobic004G127700 Sobic001G120300--Sobic004G127700 Sobic010G084000 Sobic010G084000 Sobic001G120300--Sobic010G084000 Sobic001G123000 Sobic001G123000 Sobic001G120300--Sobic001G123000 Sobic010G205800 Sobic010G205800 Sobic001G120300--Sobic010G205800 Sobic001G000200 Sobic001G000200 Sobic001G120300--Sobic001G000200 Sobic004G183600 Sobic004G183600 Sobic001G120300--Sobic004G183600 Sobic002G092300 Sobic002G092300 Sobic001G120300--Sobic002G092300 Sobic001G111150--Sobic010G130200 Sobic001G111150--Sobic007G068100 Sobic001G111150--Sobic009G057300 Sobic001G111150--Sobic003G354400 Sobic010G001500 Sobic010G001500 Sobic001G111150--Sobic010G001500 Sobic001G111150--Sobic003G388251 Sobic001G111150--Sobic001G474500 Sobic001G111150--Sobic004G127700 Sobic004G124200 Sobic004G124200 Sobic001G111150--Sobic004G124200 Sobic008G147700--Sobic003G354400 Sobic003G436300 Sobic003G436300 Sobic008G147700--Sobic003G436300 Sobic008G147700--Sobic010G188400 Sobic008G147700--Sobic001G120300 Sobic008G147700--Sobic005G203800 Sobic008G147700--Sobic006G083600 Sobic005G091600 Sobic005G091600 Sobic008G147700--Sobic005G091600 Sobic008G147700--Sobic010G130200 Sobic006G176600 Sobic006G176600 Sobic008G147700--Sobic006G176600 Sobic010G043400 Sobic010G043400 Sobic009G126900--Sobic010G043400 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic009G126900--Sobic004G124200 Sobic003G005600 Sobic003G005600 Sobic009G126900--Sobic003G005600 Sobic009G126900--Sobic003G329400 Sobic009G126900--Sobic004G101900
Octagon: transcription factors


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