Gene annotation
Transcriptome id Sobic.008G147700.3,Sobic.008G147700.2,Sobic.008G147700.1
Synonym Sb08g019770
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5YQV7
Pfam PF10288
Panther DB PTHR20882
NCBI CDD KOG2594; Uncharacterized conserved protein
KEGG Orthology K14169; CTU2, cytoplasmic tRNA 2-thiolation protein 2
Gene Ontology GO:0002098; tRNA wobble uridine modification GO:0000049tRNA binding


Orthologs (automatic annotation)
TAIR AT4G35910 : Adenine nucleotide alpha hydrolases-like superfamily protein
RAP-DB (Rice) LOC_Os12g39840.1 : expressed protein
MaizeGDB (Corn) Zm00025a025192
Brachypodium KQJ86073 , KQJ86072
Barley HORVU5Hr1G018150.6 , HORVU5Hr1G018150.1 , HORVU5Hr1G018150.2 , HORVU5Hr1G018150.3 , HORVU5Hr1G018150.4 , HORVU5Hr1G018150.5
Wheat TraesCS5B02G074900 , TraesCS5D02G080500 , TraesCS5D02G080500 , TraesCS5A02G068500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
2 Sobic.003G436300 expressed protein -
3 Sobic.010G188400 copine-1, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
4 Sobic.001G120300 phytanoyl-CoA dioxygenase, putative, expressed K00477: phytanoyl-CoA hydroxylase
5 Sobic.005G203800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lipase precursor, putative, expressed -
6 Sobic.006G083600 expressed protein K10134: etoposide-induced 2.4 mRNA
7 Sobic.005G091600 aquaporin protein, putative, expressed K09875: aquaporin SIP
8 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
9 Sobic.006G176600 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
10 Sobic.008G144401 - -
11 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
12 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
13 Sobic.001G123000 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
14 Sobic.006G237900 UBA/TS-N domain containing protein, expressed -
15 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
16 Sobic.010G080200 emp24/gp25L/p24 family protein, putative, expressed -
17 Sobic.002G361300 eukaryotic aspartyl protease domain containing protein, expressed -
18 Sobic.007G205900 uvrB/uvrC motif family protein, expressed -
19 Sobic.004G237600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
20 Sobic.008G090600 expressed protein -


Gene co-expression network
sample Sobic008G147700 Sobic008G147700 Sobic003G354400 Sobic003G354400 Sobic008G147700--Sobic003G354400 Sobic003G436300 Sobic003G436300 Sobic008G147700--Sobic003G436300 Sobic010G188400 Sobic010G188400 Sobic008G147700--Sobic010G188400 Sobic001G120300 Sobic001G120300 Sobic008G147700--Sobic001G120300 Sobic005G203800 Sobic005G203800 Sobic008G147700--Sobic005G203800 Sobic006G083600 Sobic006G083600 Sobic008G147700--Sobic006G083600 Sobic005G091600 Sobic005G091600 Sobic008G147700--Sobic005G091600 Sobic010G130200 Sobic010G130200 Sobic008G147700--Sobic010G130200 Sobic006G176600 Sobic006G176600 Sobic008G147700--Sobic006G176600 Sobic003G061800 Sobic003G061800 Sobic003G354400--Sobic003G061800 Sobic003G329400 Sobic003G329400 Sobic003G354400--Sobic003G329400 Sobic009G057300 Sobic009G057300 Sobic003G354400--Sobic009G057300 Sobic003G354400--Sobic010G130200 Sobic008G144401 Sobic008G144401 Sobic003G354400--Sobic008G144401 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic003G354400--Sobic008G147700 Sobic009G126900 Sobic009G126900 Sobic003G354400--Sobic009G126900 Sobic006G034000 Sobic006G034000 Sobic003G436300--Sobic006G034000 Sobic001G085100 Sobic001G085100 Sobic003G436300--Sobic001G085100 Sobic010G020300 Sobic010G020300 Sobic003G436300--Sobic010G020300 Sobic001G057800 Sobic001G057800 Sobic003G436300--Sobic001G057800 Sobic003G116900 Sobic003G116900 Sobic003G436300--Sobic003G116900 Sobic003G312200 Sobic003G312200 Sobic003G436300--Sobic003G312200 Sobic001G323000 Sobic001G323000 Sobic003G436300--Sobic001G323000 Sobic004G348900 Sobic004G348900 Sobic003G436300--Sobic004G348900 Sobic001G296900 Sobic001G296900 Sobic003G436300--Sobic001G296900 Sobic010G274500 Sobic010G274500 Sobic010G188400--Sobic010G274500 Sobic007G202600 Sobic007G202600 Sobic010G188400--Sobic007G202600 Sobic010G188400--Sobic008G147700 Sobic010G188400--Sobic001G120300 Sobic001G427100 Sobic001G427100 Sobic010G188400--Sobic001G427100 Sobic003G145900 Sobic003G145900 Sobic010G188400--Sobic003G145900 Sobic003G305200 Sobic003G305200 Sobic010G188400--Sobic003G305200 Sobic009G148300 Sobic009G148300 Sobic010G188400--Sobic009G148300 Sobic002G303000 Sobic002G303000 Sobic010G188400--Sobic002G303000 Sobic001G120300--Sobic003G354400 Sobic001G394600 Sobic001G394600 Sobic001G120300--Sobic001G394600 Sobic004G127700 Sobic004G127700 Sobic001G120300--Sobic004G127700 Sobic010G084000 Sobic010G084000 Sobic001G120300--Sobic010G084000 Sobic001G123000 Sobic001G123000 Sobic001G120300--Sobic001G123000 Sobic010G205800 Sobic010G205800 Sobic001G120300--Sobic010G205800 Sobic001G000200 Sobic001G000200 Sobic001G120300--Sobic001G000200 Sobic004G183600 Sobic004G183600 Sobic001G120300--Sobic004G183600 Sobic002G092300 Sobic002G092300 Sobic001G120300--Sobic002G092300 Sobic005G203800--Sobic010G130200 Sobic009G133600 Sobic009G133600 Sobic005G203800--Sobic009G133600 Sobic005G203800--Sobic003G436300 Sobic007G007000 Sobic007G007000 Sobic005G203800--Sobic007G007000 Sobic005G203800--Sobic006G034000 Sobic001G121200 Sobic001G121200 Sobic005G203800--Sobic001G121200 Sobic005G203800--Sobic003G354400 Sobic005G203800--Sobic010G205800 Sobic001G390800 Sobic001G390800 Sobic005G203800--Sobic001G390800 Sobic006G083600--Sobic010G130200 Sobic006G083600--Sobic003G305200 Sobic002G189400 Sobic002G189400 Sobic006G083600--Sobic002G189400 Sobic010G264200 Sobic010G264200 Sobic006G083600--Sobic010G264200 Sobic007G024700 Sobic007G024700 Sobic006G083600--Sobic007G024700 Sobic003G155900 Sobic003G155900 Sobic006G083600--Sobic003G155900 Sobic002G262900 Sobic002G262900 Sobic006G083600--Sobic002G262900 Sobic001G124200 Sobic001G124200 Sobic006G083600--Sobic001G124200 Sobic004G113400 Sobic004G113400 Sobic006G083600--Sobic004G113400 Sobic005G091600--Sobic001G123000 Sobic008G128600 Sobic008G128600 Sobic005G091600--Sobic008G128600 Sobic009G054700 Sobic009G054700 Sobic005G091600--Sobic009G054700 Sobic010G168600 Sobic010G168600 Sobic005G091600--Sobic010G168600 Sobic001G078500 Sobic001G078500 Sobic005G091600--Sobic001G078500 Sobic008G090600 Sobic008G090600 Sobic005G091600--Sobic008G090600 Sobic005G091600--Sobic008G147700 Sobic003G344900 Sobic003G344900 Sobic005G091600--Sobic003G344900 Sobic009G028800 Sobic009G028800 Sobic005G091600--Sobic009G028800 Sobic010G130200--Sobic006G083600 Sobic010G130200--Sobic001G111150 Sobic010G130200--Sobic003G305200 Sobic006G271200 Sobic006G271200 Sobic010G130200--Sobic006G271200 Sobic002G270500 Sobic002G270500 Sobic010G130200--Sobic002G270500 Sobic010G130200--Sobic010G264200 Sobic010G130200--Sobic003G354400 Sobic010G130200--Sobic007G024700 Sobic010G130200--Sobic005G203800 Sobic002G294200 Sobic002G294200 Sobic006G176600--Sobic002G294200 Sobic010G193900 Sobic010G193900 Sobic006G176600--Sobic010G193900 Sobic010G002400 Sobic010G002400 Sobic006G176600--Sobic010G002400 Sobic006G148200 Sobic006G148200 Sobic006G176600--Sobic006G148200 Sobic001G049200 Sobic001G049200 Sobic006G176600--Sobic001G049200 Sobic006G222100 Sobic006G222100 Sobic006G176600--Sobic006G222100 Sobic004G237600 Sobic004G237600 Sobic006G176600--Sobic004G237600 Sobic007G136100 Sobic007G136100 Sobic006G176600--Sobic007G136100 Sobic003G012200 Sobic003G012200 Sobic006G176600--Sobic003G012200
Octagon: transcription factors


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