Gene annotation
Transcriptome id Sobic.006G083600.1
Synonym Sb06g017010
Functional annotation expressed protein
UniProt C5Y8P2
Pfam PF07264
Panther DB PTHR21389 PTHR21389:SF0
NCBI CDD -
KEGG Orthology K10134; etoposide-induced 2.4 mRNA
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G06676 : -
RAP-DB (Rice) LOC_Os04g35380.1 : expressed protein
MaizeGDB (Corn) Zm00025a011349
Brachypodium KQJ82671
Barley HORVU2Hr1G075710.4 , HORVU2Hr1G075710.5 , HORVU2Hr1G075710.6 , HORVU2Hr1G075710.7 , HORVU2Hr1G075710.1 , HORVU2Hr1G075710.2 , HORVU2Hr1G075710.3 , HORVU2Hr1G075710.8 , HORVU2Hr1G075710.9 , HORVU2Hr1G075710.16 , HORVU2Hr1G075710.17 , HORVU2Hr1G075710.14 , HORVU2Hr1G075710.15 , HORVU2Hr1G075710.12 , HORVU2Hr1G075710.13 , HORVU2Hr1G075710.10 , HORVU2Hr1G075710.11 , HORVU2Hr1G075710.18 , HORVU2Hr1G075710.19
Wheat TraesCS2B02G321300 , TraesCS2D02G303200 , TraesCS2A02G304600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
2 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
3 Sobic.002G189400 AMP-binding enzyme, putative, expressed -
4 Sobic.010G264200 UPF0183 protein, putative, expressed -
5 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
6 Sobic.003G155900 mov34/MPN/PAD-1 family protein, expressed K11866: STAMBP, STAM-binding protein
7 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
8 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
9 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
10 Sobic.002G179900 ABC transporter, ATP-binding protein, putative, expressed -
11 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
12 Sobic.001G085100 expressed protein -
13 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
14 Sobic.009G148300 expressed protein -
15 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
16 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
17 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
18 Sobic.004G237400 cullin, putative, expressed K03869: cullin 3
19 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
20 Sobic.003G195500 SEY1, putative, expressed -


Gene co-expression network
sample Sobic006G083600 Sobic006G083600 Sobic010G130200 Sobic010G130200 Sobic006G083600--Sobic010G130200 Sobic003G305200 Sobic003G305200 Sobic006G083600--Sobic003G305200 Sobic002G189400 Sobic002G189400 Sobic006G083600--Sobic002G189400 Sobic010G264200 Sobic010G264200 Sobic006G083600--Sobic010G264200 Sobic007G024700 Sobic007G024700 Sobic006G083600--Sobic007G024700 Sobic003G155900 Sobic003G155900 Sobic006G083600--Sobic003G155900 Sobic002G262900 Sobic002G262900 Sobic006G083600--Sobic002G262900 Sobic001G124200 Sobic001G124200 Sobic006G083600--Sobic001G124200 Sobic004G113400 Sobic004G113400 Sobic006G083600--Sobic004G113400 Sobic010G130200--Sobic006G083600 Sobic001G111150 Sobic001G111150 Sobic010G130200--Sobic001G111150 Sobic010G130200--Sobic003G305200 Sobic006G271200 Sobic006G271200 Sobic010G130200--Sobic006G271200 Sobic002G270500 Sobic002G270500 Sobic010G130200--Sobic002G270500 Sobic010G130200--Sobic010G264200 Sobic003G354400 Sobic003G354400 Sobic010G130200--Sobic003G354400 Sobic010G130200--Sobic007G024700 Sobic005G203800 Sobic005G203800 Sobic010G130200--Sobic005G203800 Sobic003G305200--Sobic007G024700 Sobic003G305200--Sobic010G130200 Sobic001G427100 Sobic001G427100 Sobic003G305200--Sobic001G427100 Sobic003G305200--Sobic006G083600 Sobic002G132000 Sobic002G132000 Sobic003G305200--Sobic002G132000 Sobic004G295800 Sobic004G295800 Sobic003G305200--Sobic004G295800 Sobic009G094300 Sobic009G094300 Sobic003G305200--Sobic009G094300 Sobic003G305200--Sobic002G270500 Sobic003G329400 Sobic003G329400 Sobic003G305200--Sobic003G329400 Sobic010G228500 Sobic010G228500 Sobic002G189400--Sobic010G228500 Sobic004G339100 Sobic004G339100 Sobic002G189400--Sobic004G339100 Sobic002G189400--Sobic006G083600 Sobic009G148300 Sobic009G148300 Sobic002G189400--Sobic009G148300 Sobic007G202600 Sobic007G202600 Sobic002G189400--Sobic007G202600 Sobic002G189400--Sobic004G113400 Sobic004G127700 Sobic004G127700 Sobic002G189400--Sobic004G127700 Sobic008G099800 Sobic008G099800 Sobic002G189400--Sobic008G099800 Sobic002G111600 Sobic002G111600 Sobic002G189400--Sobic002G111600 Sobic010G264200--Sobic007G024700 Sobic010G264200--Sobic010G130200 Sobic002G382600 Sobic002G382600 Sobic010G264200--Sobic002G382600 Sobic009G249200 Sobic009G249200 Sobic010G264200--Sobic009G249200 Sobic010G264200--Sobic001G124200 Sobic010G020300 Sobic010G020300 Sobic010G264200--Sobic010G020300 Sobic001G466700 Sobic001G466700 Sobic010G264200--Sobic001G466700 Sobic001G436900 Sobic001G436900 Sobic010G264200--Sobic001G436900 Sobic010G264200--Sobic006G083600 Sobic007G024700--Sobic002G270500 Sobic007G024700--Sobic009G094300 Sobic007G024700--Sobic009G249200 Sobic004G052900 Sobic004G052900 Sobic007G024700--Sobic004G052900 Sobic001G270400 Sobic001G270400 Sobic007G024700--Sobic001G270400 Sobic004G264400 Sobic004G264400 Sobic007G024700--Sobic004G264400 Sobic007G024700--Sobic003G305200 Sobic007G024700--Sobic002G132000 Sobic002G419800 Sobic002G419800 Sobic007G024700--Sobic002G419800 Sobic003G352200 Sobic003G352200 Sobic003G155900--Sobic003G352200 Sobic007G163100 Sobic007G163100 Sobic003G155900--Sobic007G163100 Sobic003G155900--Sobic001G124200 Sobic006G012500 Sobic006G012500 Sobic003G155900--Sobic006G012500 Sobic001G392300 Sobic001G392300 Sobic003G155900--Sobic001G392300 Sobic003G155900--Sobic002G262900 Sobic010G205800 Sobic010G205800 Sobic003G155900--Sobic010G205800 Sobic003G422900 Sobic003G422900 Sobic003G155900--Sobic003G422900 Sobic002G045600 Sobic002G045600 Sobic003G155900--Sobic002G045600 Sobic002G008800 Sobic002G008800 Sobic002G262900--Sobic002G008800 Sobic004G275700 Sobic004G275700 Sobic002G262900--Sobic004G275700 Sobic010G164000 Sobic010G164000 Sobic002G262900--Sobic010G164000 Sobic006G136400 Sobic006G136400 Sobic002G262900--Sobic006G136400 Sobic004G039600 Sobic004G039600 Sobic002G262900--Sobic004G039600 Sobic002G262900--Sobic010G205800 Sobic010G261600 Sobic010G261600 Sobic002G262900--Sobic010G261600 Sobic002G262900--Sobic003G155900 Sobic002G262900--Sobic001G124200 Sobic001G124200--Sobic010G205800 Sobic001G124200--Sobic010G020300 Sobic001G124200--Sobic003G155900 Sobic001G124200--Sobic004G039600 Sobic010G278200 Sobic010G278200 Sobic001G124200--Sobic010G278200 Sobic007G132100 Sobic007G132100 Sobic001G124200--Sobic007G132100 Sobic009G138100 Sobic009G138100 Sobic001G124200--Sobic009G138100 Sobic001G390800 Sobic001G390800 Sobic001G124200--Sobic001G390800 Sobic009G228700 Sobic009G228700 Sobic001G124200--Sobic009G228700 Sobic009G010600 Sobic009G010600 Sobic004G113400--Sobic009G010600 Sobic003G408600 Sobic003G408600 Sobic004G113400--Sobic003G408600 Sobic004G329400 Sobic004G329400 Sobic004G113400--Sobic004G329400 Sobic001G058700 Sobic001G058700 Sobic004G113400--Sobic001G058700 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic001G117200 Sobic001G117200 Sobic004G113400--Sobic001G117200 Sobic001G534800 Sobic001G534800 Sobic004G113400--Sobic001G534800 Sobic002G430000 Sobic002G430000 Sobic004G113400--Sobic002G430000
Octagon: transcription factors


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