Gene annotation
Transcriptome id Sobic.004G237400.1
Synonym ATCUL3, CUL3, ATCUL3A, Sb04g027970, CUL3A
Functional annotation cullin, putative, expressed
UniProt C5XYS7
Pfam PF10557 PF00888
Panther DB PTHR11932 PTHR11932:SF86
NCBI CDD KOG2167; Cullins
KEGG Orthology K03869; cullin 3
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT1G26830 : cullin 3
RAP-DB (Rice) LOC_Os02g51180.1 : cullin, putative, expressed
MaizeGDB (Corn) Zm00025a022038
Brachypodium KQJ95221 , KQK01936
Barley HORVU6Hr1G075720.4 , HORVU6Hr1G075720.1 , HORVU6Hr1G075720.3 , HORVU6Hr1G075720.2
Wheat TraesCS6A02G306600 , TraesCS6B02G335200 , TraesCS2B02G550000 , TraesCS6D02G285800
Populus PNT15578 , PNT15579


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G105200 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
2 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
3 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.002G382600 expressed protein -
5 Sobic.006G115600 expressed protein -
6 Sobic.006G004500 arginase, putative, expressed K01476: E3.5.3.1, rocF, arginase
7 Sobic.004G264400 TBC domain containing protein, expressed -
8 Sobic.010G164000 FYVE zinc finger domain containing protein, expressed -
9 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
10 Sobic.004G041200 expressed protein -
11 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
12 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
13 Sobic.007G028100 WD repeat-containing protein, putative, expressed -
14 Sobic.007G009700 nucleic acid binding protein, putative, expressed K12839: SMNDC1, survival of motor neuron-related-splicing factor 30
15 Sobic.003G053800 WD40-like domain containing protein, putative, expressed -
16 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
17 Sobic.010G020300 spastin, putative, expressed K13254: spastin
18 Sobic.006G182200 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.006G148100 DUF647 domain containing protein, putative, expressed -
20 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1


Gene co-expression network
sample Sobic004G237400 Sobic004G237400 Sobic002G105200 Sobic002G105200 Sobic004G237400--Sobic002G105200 Sobic009G113000 Sobic009G113000 Sobic004G237400--Sobic009G113000 Sobic003G352200 Sobic003G352200 Sobic004G237400--Sobic003G352200 Sobic002G382600 Sobic002G382600 Sobic004G237400--Sobic002G382600 Sobic006G115600 Sobic006G115600 Sobic004G237400--Sobic006G115600 Sobic006G004500 Sobic006G004500 Sobic004G237400--Sobic006G004500 Sobic004G264400 Sobic004G264400 Sobic004G237400--Sobic004G264400 Sobic010G164000 Sobic010G164000 Sobic004G237400--Sobic010G164000 Sobic001G473600 Sobic001G473600 Sobic004G237400--Sobic001G473600 Sobic002G105200--Sobic002G382600 Sobic003G416400 Sobic003G416400 Sobic002G105200--Sobic003G416400 Sobic002G105200--Sobic004G237400 Sobic003G053800 Sobic003G053800 Sobic002G105200--Sobic003G053800 Sobic010G020300 Sobic010G020300 Sobic002G105200--Sobic010G020300 Sobic002G105200--Sobic003G352200 Sobic001G296900 Sobic001G296900 Sobic002G105200--Sobic001G296900 Sobic002G105200--Sobic001G473600 Sobic004G091200 Sobic004G091200 Sobic002G105200--Sobic004G091200 Sobic003G118200 Sobic003G118200 Sobic009G113000--Sobic003G118200 Sobic009G113000--Sobic004G264400 Sobic009G053900 Sobic009G053900 Sobic009G113000--Sobic009G053900 Sobic007G075400 Sobic007G075400 Sobic009G113000--Sobic007G075400 Sobic004G347400 Sobic004G347400 Sobic009G113000--Sobic004G347400 Sobic001G121200 Sobic001G121200 Sobic009G113000--Sobic001G121200 Sobic004G331100 Sobic004G331100 Sobic009G113000--Sobic004G331100 Sobic004G200200 Sobic004G200200 Sobic009G113000--Sobic004G200200 Sobic001G146800 Sobic001G146800 Sobic009G113000--Sobic001G146800 Sobic009G044800 Sobic009G044800 Sobic003G352200--Sobic009G044800 Sobic003G352200--Sobic001G473600 Sobic002G034600 Sobic002G034600 Sobic003G352200--Sobic002G034600 Sobic004G274200 Sobic004G274200 Sobic003G352200--Sobic004G274200 Sobic003G155900 Sobic003G155900 Sobic003G352200--Sobic003G155900 Sobic004G066200 Sobic004G066200 Sobic003G352200--Sobic004G066200 Sobic002G045600 Sobic002G045600 Sobic003G352200--Sobic002G045600 Sobic001G109800 Sobic001G109800 Sobic003G352200--Sobic001G109800 Sobic001G088100 Sobic001G088100 Sobic003G352200--Sobic001G088100 Sobic002G382600--Sobic002G105200 Sobic010G167900 Sobic010G167900 Sobic002G382600--Sobic010G167900 Sobic002G382600--Sobic009G113000 Sobic002G382600--Sobic004G237400 Sobic010G264200 Sobic010G264200 Sobic002G382600--Sobic010G264200 Sobic002G382600--Sobic004G331100 Sobic001G279100 Sobic001G279100 Sobic002G382600--Sobic001G279100 Sobic002G382600--Sobic001G109800 Sobic001G436900 Sobic001G436900 Sobic002G382600--Sobic001G436900 Sobic006G115600--Sobic007G075400 Sobic006G115600--Sobic002G045600 Sobic006G115600--Sobic004G264400 Sobic001G050200 Sobic001G050200 Sobic006G115600--Sobic001G050200 Sobic010G139600 Sobic010G139600 Sobic006G115600--Sobic010G139600 Sobic006G115600--Sobic004G331100 Sobic007G163100 Sobic007G163100 Sobic006G115600--Sobic007G163100 Sobic006G115600--Sobic003G118200 Sobic010G278200 Sobic010G278200 Sobic006G115600--Sobic010G278200 Sobic006G004500--Sobic004G237400 Sobic006G004500--Sobic001G436900 Sobic003G089000 Sobic003G089000 Sobic006G004500--Sobic003G089000 Sobic002G058500 Sobic002G058500 Sobic006G004500--Sobic002G058500 Sobic006G004500--Sobic002G105200 Sobic007G028100 Sobic007G028100 Sobic006G004500--Sobic007G028100 Sobic007G000200 Sobic007G000200 Sobic006G004500--Sobic007G000200 Sobic006G004500--Sobic009G113000 Sobic007G060000 Sobic007G060000 Sobic006G004500--Sobic007G060000 Sobic004G264400--Sobic001G109800 Sobic004G264400--Sobic009G113000 Sobic002G132000 Sobic002G132000 Sobic004G264400--Sobic002G132000 Sobic007G024700 Sobic007G024700 Sobic004G264400--Sobic007G024700 Sobic004G264400--Sobic004G331100 Sobic004G264400--Sobic006G115600 Sobic001G065000 Sobic001G065000 Sobic004G264400--Sobic001G065000 Sobic004G264400--Sobic004G274200 Sobic004G264400--Sobic007G075400 Sobic002G262900 Sobic002G262900 Sobic010G164000--Sobic002G262900 Sobic001G085100 Sobic001G085100 Sobic010G164000--Sobic001G085100 Sobic010G000900 Sobic010G000900 Sobic010G164000--Sobic010G000900 Sobic004G275700 Sobic004G275700 Sobic010G164000--Sobic004G275700 Sobic010G164000--Sobic004G066200 Sobic010G164000--Sobic001G121200 Sobic001G091300 Sobic001G091300 Sobic010G164000--Sobic001G091300 Sobic009G228700 Sobic009G228700 Sobic010G164000--Sobic009G228700 Sobic010G261600 Sobic010G261600 Sobic010G164000--Sobic010G261600 Sobic001G473600--Sobic002G034600 Sobic001G473600--Sobic003G352200 Sobic007G046200 Sobic007G046200 Sobic001G473600--Sobic007G046200 Sobic001G395100 Sobic001G395100 Sobic001G473600--Sobic001G395100 Sobic004G353000 Sobic004G353000 Sobic001G473600--Sobic004G353000 Sobic007G084100 Sobic007G084100 Sobic001G473600--Sobic007G084100 Sobic001G473600--Sobic001G088100 Sobic007G041300 Sobic007G041300 Sobic001G473600--Sobic007G041300 Sobic007G075900 Sobic007G075900 Sobic001G473600--Sobic007G075900
Octagon: transcription factors


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