Gene annotation
Transcriptome id Sobic.006G004500.1
Synonym Sb06g000580
Functional annotation arginase, putative, expressed
UniProt C5YBK6
Pfam PF00491
Panther DB PTHR11358 PTHR11358:SF32
NCBI CDD KOG2964; Arginase family protein
KEGG Orthology K01476; E3.5.3.1, rocF, arginase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G08900 : arginase
RAP-DB (Rice) LOC_Os04g01590.1 : arginase, putative, expressed
MaizeGDB (Corn) Zm00025a055476
Brachypodium KQJ81663
Barley HORVU2Hr1G005320.2 , HORVU2Hr1G005320.3 , HORVU2Hr1G005320.1 , HORVU2Hr1G005320.4
Wheat TraesCS2B02G048700 , TraesCS2D02G034900 , TraesCS2D02G034900 , TraesCS2A02G035700
Populus -


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cDNA sequences
Sobic.006G004500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G237400 cullin, putative, expressed K03869: cullin 3
2 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
3 Sobic.003G089000 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
4 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
5 Sobic.002G105200 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
6 Sobic.007G028100 WD repeat-containing protein, putative, expressed -
7 Sobic.007G000200 expressed protein -
8 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
9 Sobic.007G060000 octicosapeptide/Phox/Bem1p, putative, expressed -
10 Sobic.001G279100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CW7, putative, expressed -
11 Sobic.002G346400 transmembrane protein 49, putative, expressed -
12 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
13 Sobic.001G375600 transmembrane protein, putative, expressed -
14 Sobic.006G115600 expressed protein -
15 Sobic.003G116900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
16 Sobic.006G115466 - -
17 Sobic.002G382600 expressed protein -
18 Sobic.001G430400 Ser/Thr protein phosphatase family protein, putative, expressed -
19 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
20 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G004500 Sobic006G004500 Sobic004G237400 Sobic004G237400 Sobic006G004500--Sobic004G237400 Sobic001G436900 Sobic001G436900 Sobic006G004500--Sobic001G436900 Sobic003G089000 Sobic003G089000 Sobic006G004500--Sobic003G089000 Sobic002G058500 Sobic002G058500 Sobic006G004500--Sobic002G058500 Sobic002G105200 Sobic002G105200 Sobic006G004500--Sobic002G105200 Sobic007G028100 Sobic007G028100 Sobic006G004500--Sobic007G028100 Sobic007G000200 Sobic007G000200 Sobic006G004500--Sobic007G000200 Sobic009G113000 Sobic009G113000 Sobic006G004500--Sobic009G113000 Sobic007G060000 Sobic007G060000 Sobic006G004500--Sobic007G060000 Sobic004G237400--Sobic002G105200 Sobic004G237400--Sobic009G113000 Sobic003G352200 Sobic003G352200 Sobic004G237400--Sobic003G352200 Sobic002G382600 Sobic002G382600 Sobic004G237400--Sobic002G382600 Sobic006G115600 Sobic006G115600 Sobic004G237400--Sobic006G115600 Sobic004G237400--Sobic006G004500 Sobic004G264400 Sobic004G264400 Sobic004G237400--Sobic004G264400 Sobic010G164000 Sobic010G164000 Sobic004G237400--Sobic010G164000 Sobic001G473600 Sobic001G473600 Sobic004G237400--Sobic001G473600 Sobic004G331100 Sobic004G331100 Sobic001G436900--Sobic004G331100 Sobic003G320700 Sobic003G320700 Sobic001G436900--Sobic003G320700 Sobic004G065000 Sobic004G065000 Sobic001G436900--Sobic004G065000 Sobic006G271200 Sobic006G271200 Sobic001G436900--Sobic006G271200 Sobic006G204900 Sobic006G204900 Sobic001G436900--Sobic006G204900 Sobic007G075400 Sobic007G075400 Sobic001G436900--Sobic007G075400 Sobic001G436900--Sobic009G113000 Sobic001G436900--Sobic002G382600 Sobic010G264200 Sobic010G264200 Sobic001G436900--Sobic010G264200 Sobic004G177300 Sobic004G177300 Sobic003G089000--Sobic004G177300 Sobic006G032300 Sobic006G032300 Sobic003G089000--Sobic006G032300 Sobic002G335600 Sobic002G335600 Sobic003G089000--Sobic002G335600 Sobic010G072800 Sobic010G072800 Sobic003G089000--Sobic010G072800 Sobic001G273700 Sobic001G273700 Sobic003G089000--Sobic001G273700 Sobic002G142900 Sobic002G142900 Sobic003G089000--Sobic002G142900 Sobic001G263600 Sobic001G263600 Sobic003G089000--Sobic001G263600 Sobic001G375600 Sobic001G375600 Sobic003G089000--Sobic001G375600 Sobic003G089000--Sobic007G000200 Sobic006G139000 Sobic006G139000 Sobic002G058500--Sobic006G139000 Sobic001G227800 Sobic001G227800 Sobic002G058500--Sobic001G227800 Sobic001G395700 Sobic001G395700 Sobic002G058500--Sobic001G395700 Sobic005G019800 Sobic005G019800 Sobic002G058500--Sobic005G019800 Sobic002G215700 Sobic002G215700 Sobic002G058500--Sobic002G215700 Sobic004G101900 Sobic004G101900 Sobic002G058500--Sobic004G101900 Sobic003G226200 Sobic003G226200 Sobic002G058500--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G058500--Sobic004G124200 Sobic001G280000 Sobic001G280000 Sobic002G058500--Sobic001G280000 Sobic002G105200--Sobic002G382600 Sobic003G416400 Sobic003G416400 Sobic002G105200--Sobic003G416400 Sobic002G105200--Sobic004G237400 Sobic003G053800 Sobic003G053800 Sobic002G105200--Sobic003G053800 Sobic010G020300 Sobic010G020300 Sobic002G105200--Sobic010G020300 Sobic002G105200--Sobic003G352200 Sobic001G296900 Sobic001G296900 Sobic002G105200--Sobic001G296900 Sobic002G105200--Sobic001G473600 Sobic004G091200 Sobic004G091200 Sobic002G105200--Sobic004G091200 Sobic002G314900 Sobic002G314900 Sobic007G028100--Sobic002G314900 Sobic007G028100--Sobic004G237400 Sobic007G028100--Sobic007G000200 Sobic006G115466 Sobic006G115466 Sobic007G028100--Sobic006G115466 Sobic007G028100--Sobic003G089000 Sobic007G028100--Sobic006G004500 Sobic007G028100--Sobic001G436900 Sobic007G028100--Sobic002G382600 Sobic009G069000 Sobic009G069000 Sobic007G028100--Sobic009G069000 Sobic007G000200--Sobic006G032300 Sobic003G046300 Sobic003G046300 Sobic007G000200--Sobic003G046300 Sobic008G002300 Sobic008G002300 Sobic007G000200--Sobic008G002300 Sobic002G245000 Sobic002G245000 Sobic007G000200--Sobic002G245000 Sobic001G430400 Sobic001G430400 Sobic007G000200--Sobic001G430400 Sobic002G164200 Sobic002G164200 Sobic007G000200--Sobic002G164200 Sobic007G000200--Sobic003G089000 Sobic001G542450 Sobic001G542450 Sobic007G000200--Sobic001G542450 Sobic006G088200 Sobic006G088200 Sobic007G000200--Sobic006G088200 Sobic003G118200 Sobic003G118200 Sobic009G113000--Sobic003G118200 Sobic009G113000--Sobic004G264400 Sobic009G053900 Sobic009G053900 Sobic009G113000--Sobic009G053900 Sobic009G113000--Sobic007G075400 Sobic004G347400 Sobic004G347400 Sobic009G113000--Sobic004G347400 Sobic001G121200 Sobic001G121200 Sobic009G113000--Sobic001G121200 Sobic009G113000--Sobic004G331100 Sobic004G200200 Sobic004G200200 Sobic009G113000--Sobic004G200200 Sobic001G146800 Sobic001G146800 Sobic009G113000--Sobic001G146800 Sobic007G060000--Sobic006G004500 Sobic007G060000--Sobic001G436900 Sobic007G060000--Sobic003G320700 Sobic007G060000--Sobic006G204900 Sobic006G126500 Sobic006G126500 Sobic007G060000--Sobic006G126500 Sobic001G305500 Sobic001G305500 Sobic007G060000--Sobic001G305500 Sobic002G346400 Sobic002G346400 Sobic007G060000--Sobic002G346400 Sobic007G060000--Sobic003G089000 Sobic007G060000--Sobic002G058500
Octagon: transcription factors


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