Gene annotation
Transcriptome id Sobic.003G304200.1
Synonym SDP1, Sb03g035280
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
phospholipase, patatin family, putative, expressed
UniProt C5XKU4
Pfam PF01734 PF11815
Panther DB PTHR14226 PTHR14226:SF30
NCBI CDD -
KEGG Orthology K14674; TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
Gene Ontology GO:0006629; lipid metabolic process GO:0004806triglyceride lipase activity


Orthologs (automatic annotation)
TAIR AT5G04040 : Patatin-like phospholipase family protein
RAP-DB (Rice) LOC_Os01g55650.1 : phospholipase, patatin family, putative, expressed
MaizeGDB (Corn) Zm00025a039976
Brachypodium KQK09867
Barley HORVU3Hr1G073700.1 , HORVU6Hr1G081130.1 , HORVU2Hr1G124700.1 , HORVU1Hr1G017370.1 , HORVU6Hr1G028140.6 , HORVU6Hr1G028140.5 , HORVU6Hr1G028140.7 , HORVU6Hr1G028140.4 , HORVU6Hr1G028140.3 , HORVU6Hr1G028140.2 , HORVU6Hr1G028140.1 , HORVU6Hr1G028140.9 , HORVU6Hr1G028140.8 , HORVU4Hr1G001470.4 , HORVU4Hr1G001470.3 , HORVU3Hr1G073710.9 , HORVU3Hr1G073710.10 , HORVU3Hr1G073710.8 , HORVU3Hr1G073710.7 , HORVU3Hr1G073710.6 , HORVU3Hr1G073710.5 , HORVU3Hr1G073710.4 , HORVU3Hr1G073710.3 , HORVU3Hr1G073710.2
Wheat TraesCS3D02G298200 , TraesCS3B02G332700 , TraesCS3A02G303600
Populus PNT29684


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G088100 phosphatidylinositol 3-kinase, root isoform, putative, expressed K00914: PIK3C3, phosphatidylinositol 3-kinase
2 Sobic.008G061100 expressed protein -
3 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
4 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
5 Sobic.001G375600 transmembrane protein, putative, expressed -
6 Sobic.001G227800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
7 Sobic.001G279100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CW7, putative, expressed -
8 Sobic.006G004500 arginase, putative, expressed K01476: E3.5.3.1, rocF, arginase
9 Sobic.003G005600 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
10 Sobic.003G084000 transporter family protein, putative, expressed -
11 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
12 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
13 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
14 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
15 Sobic.003G226200 neutral ceramidase precursor, putative, expressed K12349: neutral ceramidase
16 Sobic.003G401200 selenium-binding protein, putative, expressed K17285: methanethiol oxidase
17 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
18 Sobic.001G130200 DUF1336 domain containing protein, expressed -
19 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
20 Sobic.006G126500 OsFBX146 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic003G304200 Sobic003G304200 Sobic007G088100 Sobic007G088100 Sobic003G304200--Sobic007G088100 Sobic008G061100 Sobic008G061100 Sobic003G304200--Sobic008G061100 Sobic001G436900 Sobic001G436900 Sobic003G304200--Sobic001G436900 Sobic002G058500 Sobic002G058500 Sobic003G304200--Sobic002G058500 Sobic001G375600 Sobic001G375600 Sobic003G304200--Sobic001G375600 Sobic001G227800 Sobic001G227800 Sobic003G304200--Sobic001G227800 Sobic001G279100 Sobic001G279100 Sobic003G304200--Sobic001G279100 Sobic006G004500 Sobic006G004500 Sobic003G304200--Sobic006G004500 Sobic003G005600 Sobic003G005600 Sobic003G304200--Sobic003G005600 Sobic001G273700 Sobic001G273700 Sobic007G088100--Sobic001G273700 Sobic007G088100--Sobic001G375600 Sobic007G172200 Sobic007G172200 Sobic007G088100--Sobic007G172200 Sobic003G259100 Sobic003G259100 Sobic007G088100--Sobic003G259100 Sobic004G065000 Sobic004G065000 Sobic007G088100--Sobic004G065000 Sobic006G037700 Sobic006G037700 Sobic007G088100--Sobic006G037700 Sobic006G126500 Sobic006G126500 Sobic007G088100--Sobic006G126500 Sobic010G072800 Sobic010G072800 Sobic007G088100--Sobic010G072800 Sobic006G204900 Sobic006G204900 Sobic007G088100--Sobic006G204900 Sobic008G061100--Sobic001G279100 Sobic010G129600 Sobic010G129600 Sobic008G061100--Sobic010G129600 Sobic008G061100--Sobic003G304200 Sobic006G237900 Sobic006G237900 Sobic008G061100--Sobic006G237900 Sobic006G271200 Sobic006G271200 Sobic008G061100--Sobic006G271200 Sobic001G298300 Sobic001G298300 Sobic008G061100--Sobic001G298300 Sobic008G186200 Sobic008G186200 Sobic008G061100--Sobic008G186200 Sobic006G115466 Sobic006G115466 Sobic008G061100--Sobic006G115466 Sobic008G061100--Sobic001G436900 Sobic004G331100 Sobic004G331100 Sobic001G436900--Sobic004G331100 Sobic003G320700 Sobic003G320700 Sobic001G436900--Sobic003G320700 Sobic001G436900--Sobic004G065000 Sobic001G436900--Sobic006G271200 Sobic001G436900--Sobic006G204900 Sobic007G075400 Sobic007G075400 Sobic001G436900--Sobic007G075400 Sobic009G113000 Sobic009G113000 Sobic001G436900--Sobic009G113000 Sobic002G382600 Sobic002G382600 Sobic001G436900--Sobic002G382600 Sobic010G264200 Sobic010G264200 Sobic001G436900--Sobic010G264200 Sobic006G139000 Sobic006G139000 Sobic002G058500--Sobic006G139000 Sobic002G058500--Sobic001G227800 Sobic001G395700 Sobic001G395700 Sobic002G058500--Sobic001G395700 Sobic005G019800 Sobic005G019800 Sobic002G058500--Sobic005G019800 Sobic002G215700 Sobic002G215700 Sobic002G058500--Sobic002G215700 Sobic004G101900 Sobic004G101900 Sobic002G058500--Sobic004G101900 Sobic003G226200 Sobic003G226200 Sobic002G058500--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G058500--Sobic004G124200 Sobic001G280000 Sobic001G280000 Sobic002G058500--Sobic001G280000 Sobic001G007100 Sobic001G007100 Sobic001G375600--Sobic001G007100 Sobic001G375600--Sobic010G072800 Sobic009G165400 Sobic009G165400 Sobic001G375600--Sobic009G165400 Sobic001G375600--Sobic001G273700 Sobic001G375600--Sobic007G088100 Sobic003G089000 Sobic003G089000 Sobic001G375600--Sobic003G089000 Sobic004G269200 Sobic004G269200 Sobic001G375600--Sobic004G269200 Sobic001G375600--Sobic003G259100 Sobic001G375600--Sobic006G204900 Sobic001G227800--Sobic002G215700 Sobic009G226300 Sobic009G226300 Sobic001G227800--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic001G227800--Sobic009G054500 Sobic007G187300 Sobic007G187300 Sobic001G227800--Sobic007G187300 Sobic003G259200 Sobic003G259200 Sobic001G227800--Sobic003G259200 Sobic002G304000 Sobic002G304000 Sobic001G227800--Sobic002G304000 Sobic005G018500 Sobic005G018500 Sobic001G227800--Sobic005G018500 Sobic006G100332 Sobic006G100332 Sobic001G227800--Sobic006G100332 Sobic003G219600 Sobic003G219600 Sobic001G227800--Sobic003G219600 Sobic001G279100--Sobic002G382600 Sobic001G279100--Sobic008G061100 Sobic002G314900 Sobic002G314900 Sobic001G279100--Sobic002G314900 Sobic007G119200 Sobic007G119200 Sobic001G279100--Sobic007G119200 Sobic001G517500 Sobic001G517500 Sobic001G279100--Sobic001G517500 Sobic001G279100--Sobic010G129600 Sobic001G279100--Sobic006G115466 Sobic007G046200 Sobic007G046200 Sobic001G279100--Sobic007G046200 Sobic001G279100--Sobic001G436900 Sobic004G237400 Sobic004G237400 Sobic006G004500--Sobic004G237400 Sobic006G004500--Sobic001G436900 Sobic006G004500--Sobic003G089000 Sobic006G004500--Sobic002G058500 Sobic002G105200 Sobic002G105200 Sobic006G004500--Sobic002G105200 Sobic007G028100 Sobic007G028100 Sobic006G004500--Sobic007G028100 Sobic007G000200 Sobic007G000200 Sobic006G004500--Sobic007G000200 Sobic006G004500--Sobic009G113000 Sobic007G060000 Sobic007G060000 Sobic006G004500--Sobic007G060000 Sobic009G126900 Sobic009G126900 Sobic003G005600--Sobic009G126900 Sobic003G005600--Sobic002G304000 Sobic001G003000 Sobic001G003000 Sobic003G005600--Sobic001G003000 Sobic003G329400 Sobic003G329400 Sobic003G005600--Sobic003G329400 Sobic003G005600--Sobic006G271200 Sobic003G005600--Sobic004G101900 Sobic008G062200 Sobic008G062200 Sobic003G005600--Sobic008G062200 Sobic010G043400 Sobic010G043400 Sobic003G005600--Sobic010G043400 Sobic010G064700 Sobic010G064700 Sobic003G005600--Sobic010G064700
Octagon: transcription factors


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