Gene annotation
Transcriptome id Sobic.001G130200.1
Synonym CW14, Sb01g011420
Functional annotation DUF1336 domain containing protein, expressed
UniProt C5WPH0
Pfam PF07059
Panther DB PTHR31558 PTHR31558:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G59650 : Protein of unknown function (DUF1336)
RAP-DB (Rice) LOC_Os03g48660.1 : DUF1336 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017080 , Zm00025a007671
Brachypodium KQK13706 , KQK13707
Barley HORVU4Hr1G005350.1 , HORVU4Hr1G005360.1 , HORVU4Hr1G005360.2 , HORVU4Hr1G005360.3
Wheat TraesCS4D02G030200 , TraesCS4B02G032500 , TraesCS3B02G283400 , TraesCS4A02G279800
Populus -


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cDNA sequences
Sobic.001G130200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
2 Sobic.003G381600 ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
3 Sobic.006G224300 APO, putative, expressed -
4 Sobic.003G398400 expressed protein -
5 Sobic.001G424900 - -
6 Sobic.008G173400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
7 Sobic.010G243400 expressed protein -
8 Sobic.007G158900 expressed protein -
9 Sobic.003G394200 vacuolar protein sorting-associated protein 53, putative, expressed -
10 Sobic.009G059400 expressed protein -
11 Sobic.004G218300 Zinc finger, ZZ type domain containing protein, expressed -
12 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
13 Sobic.007G056100 expressed protein K15077: elongin-A
14 Sobic.009G224000 OsQSOXL1 quiescin-sulfhydryl oxidase-like OsQSOXL1, expressed K10758: thiol oxidase
15 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
16 Sobic.003G147000 phospholipase D p1, putative, expressed K01115: phospholipase D1/2
17 Sobic.001G313400 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
18 Sobic.008G021000 exostosin family domain containing protein, expressed -
19 Sobic.004G084500 GPI-anchor transamidase precursor, putative, expressed K05290: GPI-anchor transamidase subunit K
20 Sobic.009G212600 expressed protein K00294: 1-pyrroline-5-carboxylate dehydrogenase


Gene co-expression network
sample Sobic001G130200 Sobic001G130200 Sobic009G166600 Sobic009G166600 Sobic001G130200--Sobic009G166600 Sobic003G381600 Sobic003G381600 Sobic001G130200--Sobic003G381600 Sobic006G224300 Sobic006G224300 Sobic001G130200--Sobic006G224300 Sobic003G398400 Sobic003G398400 Sobic001G130200--Sobic003G398400 Sobic001G424900 Sobic001G424900 Sobic001G130200--Sobic001G424900 Sobic008G173400 Sobic008G173400 Sobic001G130200--Sobic008G173400 Sobic010G243400 Sobic010G243400 Sobic001G130200--Sobic010G243400 Sobic007G158900 Sobic007G158900 Sobic001G130200--Sobic007G158900 Sobic003G394200 Sobic003G394200 Sobic001G130200--Sobic003G394200 Sobic002G313900 Sobic002G313900 Sobic009G166600--Sobic002G313900 Sobic005G114800 Sobic005G114800 Sobic009G166600--Sobic005G114800 Sobic006G210700 Sobic006G210700 Sobic009G166600--Sobic006G210700 Sobic005G197100 Sobic005G197100 Sobic009G166600--Sobic005G197100 Sobic009G249700 Sobic009G249700 Sobic009G166600--Sobic009G249700 Sobic008G021000 Sobic008G021000 Sobic009G166600--Sobic008G021000 Sobic009G166600--Sobic003G394200 Sobic002G292900 Sobic002G292900 Sobic009G166600--Sobic002G292900 Sobic006G128100 Sobic006G128100 Sobic009G166600--Sobic006G128100 Sobic004G180900 Sobic004G180900 Sobic003G381600--Sobic004G180900 Sobic003G381600--Sobic001G130200 Sobic009G059400 Sobic009G059400 Sobic003G381600--Sobic009G059400 Sobic009G017200 Sobic009G017200 Sobic003G381600--Sobic009G017200 Sobic003G381600--Sobic006G224300 Sobic001G017200 Sobic001G017200 Sobic003G381600--Sobic001G017200 Sobic007G018200 Sobic007G018200 Sobic003G381600--Sobic007G018200 Sobic004G116600 Sobic004G116600 Sobic003G381600--Sobic004G116600 Sobic001G405300 Sobic001G405300 Sobic003G381600--Sobic001G405300 Sobic006G224300--Sobic008G021000 Sobic004G084500 Sobic004G084500 Sobic006G224300--Sobic004G084500 Sobic006G224300--Sobic009G059400 Sobic004G345400 Sobic004G345400 Sobic006G224300--Sobic004G345400 Sobic006G224300--Sobic003G394200 Sobic009G040800 Sobic009G040800 Sobic006G224300--Sobic009G040800 Sobic006G224300--Sobic009G017200 Sobic002G115500 Sobic002G115500 Sobic006G224300--Sobic002G115500 Sobic006G203300 Sobic006G203300 Sobic006G224300--Sobic006G203300 Sobic004G218300 Sobic004G218300 Sobic003G398400--Sobic004G218300 Sobic006G130200 Sobic006G130200 Sobic003G398400--Sobic006G130200 Sobic003G398400--Sobic004G084500 Sobic003G398400--Sobic003G394200 Sobic002G164300 Sobic002G164300 Sobic003G398400--Sobic002G164300 Sobic010G213500 Sobic010G213500 Sobic003G398400--Sobic010G213500 Sobic010G074900 Sobic010G074900 Sobic003G398400--Sobic010G074900 Sobic004G122900 Sobic004G122900 Sobic003G398400--Sobic004G122900 Sobic003G407100 Sobic003G407100 Sobic003G398400--Sobic003G407100 Sobic001G424900--Sobic009G059400 Sobic007G218600 Sobic007G218600 Sobic001G424900--Sobic007G218600 Sobic003G058500 Sobic003G058500 Sobic001G424900--Sobic003G058500 Sobic007G223100 Sobic007G223100 Sobic001G424900--Sobic007G223100 Sobic001G424900--Sobic009G166600 Sobic005G009100 Sobic005G009100 Sobic001G424900--Sobic005G009100 Sobic008G116700 Sobic008G116700 Sobic001G424900--Sobic008G116700 Sobic001G424900--Sobic001G130200 Sobic001G424900--Sobic004G345400 Sobic008G173400--Sobic010G243400 Sobic004G067700 Sobic004G067700 Sobic008G173400--Sobic004G067700 Sobic001G114000 Sobic001G114000 Sobic008G173400--Sobic001G114000 Sobic001G106100 Sobic001G106100 Sobic008G173400--Sobic001G106100 Sobic002G197100 Sobic002G197100 Sobic008G173400--Sobic002G197100 Sobic004G003401 Sobic004G003401 Sobic008G173400--Sobic004G003401 Sobic008G173400--Sobic003G398400 Sobic009G041700 Sobic009G041700 Sobic008G173400--Sobic009G041700 Sobic008G165000 Sobic008G165000 Sobic008G173400--Sobic008G165000 Sobic010G243400--Sobic008G165000 Sobic007G056100 Sobic007G056100 Sobic010G243400--Sobic007G056100 Sobic010G261600 Sobic010G261600 Sobic010G243400--Sobic010G261600 Sobic003G243700 Sobic003G243700 Sobic010G243400--Sobic003G243700 Sobic010G243400--Sobic009G041700 Sobic009G224000 Sobic009G224000 Sobic010G243400--Sobic009G224000 Sobic010G243400--Sobic004G003401 Sobic010G243400--Sobic008G173400 Sobic001G421400 Sobic001G421400 Sobic010G243400--Sobic001G421400 Sobic009G199500 Sobic009G199500 Sobic007G158900--Sobic009G199500 Sobic010G181600 Sobic010G181600 Sobic007G158900--Sobic010G181600 Sobic007G192400 Sobic007G192400 Sobic007G158900--Sobic007G192400 Sobic007G158900--Sobic009G059400 Sobic002G023100 Sobic002G023100 Sobic007G158900--Sobic002G023100 Sobic007G158900--Sobic001G017200 Sobic007G158900--Sobic007G218600 Sobic007G158900--Sobic004G218300 Sobic008G006000 Sobic008G006000 Sobic007G158900--Sobic008G006000 Sobic003G394200--Sobic004G084500 Sobic003G394200--Sobic006G203300 Sobic003G394200--Sobic006G128100 Sobic010G223400 Sobic010G223400 Sobic003G394200--Sobic010G223400 Sobic001G308400 Sobic001G308400 Sobic003G394200--Sobic001G308400 Sobic009G049400 Sobic009G049400 Sobic003G394200--Sobic009G049400 Sobic003G270600 Sobic003G270600 Sobic003G394200--Sobic003G270600 Sobic003G189600 Sobic003G189600 Sobic003G394200--Sobic003G189600 Sobic001G369000 Sobic001G369000 Sobic003G394200--Sobic001G369000
Octagon: transcription factors


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