Gene annotation
Transcriptome id Sobic.003G381600.2,Sobic.003G381600.1
Synonym Sb03g042120
Functional annotation ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
UniProt A0A1B6Q7E0 , C5XEN9
Pfam PF10431 PF00004
Panther DB PTHR11262 PTHR11262:SF12
NCBI CDD -
KEGG Orthology K03544; clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G53350 : ATP-dependent Clp protease,CLP protease regulatory subunit X
RAP-DB (Rice) LOC_Os01g66330.1 : ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
MaizeGDB (Corn) Zm00025a031652 , Zm00025a039483
Brachypodium KQK10950 , KQK10951
Barley HORVU3Hr1G090710.12 , HORVU3Hr1G090710.10 , HORVU3Hr1G090710.11 , HORVU3Hr1G090710.8 , HORVU3Hr1G090710.9 , HORVU3Hr1G090710.1 , HORVU3Hr1G090710.2 , HORVU3Hr1G090710.3 , HORVU3Hr1G090710.4 , HORVU3Hr1G090710.5 , HORVU3Hr1G090710.6 , HORVU3Hr1G090710.7
Wheat TraesCS3D02G399200 , TraesCS3B02G437500 , TraesCS3A02G404000 , TraesCS3A02G404000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
2 Sobic.001G130200 DUF1336 domain containing protein, expressed -
3 Sobic.009G059400 expressed protein -
4 Sobic.009G017200 transporter family protein, putative, expressed K15276: SLC35B2, solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2
5 Sobic.006G224300 APO, putative, expressed -
6 Sobic.001G017200 protein transporter, putative, expressed K12275: translocation protein SEC62
7 Sobic.007G018200 RNA recognition motif containing protein, putative, expressed -
8 Sobic.004G116600 E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed -
9 Sobic.001G405300 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed -
10 Sobic.009G125000 cyclin-dependent kinase C-1, putative, expressed K08819: cyclin-dependent kinase 12/13
11 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
12 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
13 Sobic.001G202266 - -
14 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
15 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
16 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -
17 Sobic.001G424900 - -
18 Sobic.006G244300 expressed protein -
19 Sobic.006G144000 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.007G026000 ATBET9, putative, expressed -


Gene co-expression network
sample Sobic003G381600 Sobic003G381600 Sobic004G180900 Sobic004G180900 Sobic003G381600--Sobic004G180900 Sobic001G130200 Sobic001G130200 Sobic003G381600--Sobic001G130200 Sobic009G059400 Sobic009G059400 Sobic003G381600--Sobic009G059400 Sobic009G017200 Sobic009G017200 Sobic003G381600--Sobic009G017200 Sobic006G224300 Sobic006G224300 Sobic003G381600--Sobic006G224300 Sobic001G017200 Sobic001G017200 Sobic003G381600--Sobic001G017200 Sobic007G018200 Sobic007G018200 Sobic003G381600--Sobic007G018200 Sobic004G116600 Sobic004G116600 Sobic003G381600--Sobic004G116600 Sobic001G405300 Sobic001G405300 Sobic003G381600--Sobic001G405300 Sobic004G180900--Sobic009G017200 Sobic007G056500 Sobic007G056500 Sobic004G180900--Sobic007G056500 Sobic001G425000 Sobic001G425000 Sobic004G180900--Sobic001G425000 Sobic004G345400 Sobic004G345400 Sobic004G180900--Sobic004G345400 Sobic006G186400 Sobic006G186400 Sobic004G180900--Sobic006G186400 Sobic008G058800 Sobic008G058800 Sobic004G180900--Sobic008G058800 Sobic007G026000 Sobic007G026000 Sobic004G180900--Sobic007G026000 Sobic010G077500 Sobic010G077500 Sobic004G180900--Sobic010G077500 Sobic004G180900--Sobic003G381600 Sobic009G166600 Sobic009G166600 Sobic001G130200--Sobic009G166600 Sobic001G130200--Sobic003G381600 Sobic001G130200--Sobic006G224300 Sobic003G398400 Sobic003G398400 Sobic001G130200--Sobic003G398400 Sobic001G424900 Sobic001G424900 Sobic001G130200--Sobic001G424900 Sobic008G173400 Sobic008G173400 Sobic001G130200--Sobic008G173400 Sobic010G243400 Sobic010G243400 Sobic001G130200--Sobic010G243400 Sobic007G158900 Sobic007G158900 Sobic001G130200--Sobic007G158900 Sobic003G394200 Sobic003G394200 Sobic001G130200--Sobic003G394200 Sobic009G059400--Sobic009G017200 Sobic005G198200 Sobic005G198200 Sobic009G059400--Sobic005G198200 Sobic007G218600 Sobic007G218600 Sobic009G059400--Sobic007G218600 Sobic006G144000 Sobic006G144000 Sobic009G059400--Sobic006G144000 Sobic003G393200 Sobic003G393200 Sobic009G059400--Sobic003G393200 Sobic009G125000 Sobic009G125000 Sobic009G059400--Sobic009G125000 Sobic009G059400--Sobic004G345400 Sobic007G148400 Sobic007G148400 Sobic009G059400--Sobic007G148400 Sobic009G059400--Sobic006G224300 Sobic009G017200--Sobic004G180900 Sobic009G017200--Sobic009G059400 Sobic009G137900 Sobic009G137900 Sobic009G017200--Sobic009G137900 Sobic009G017200--Sobic008G058800 Sobic009G017200--Sobic006G144000 Sobic009G017200--Sobic001G425000 Sobic001G042200 Sobic001G042200 Sobic009G017200--Sobic001G042200 Sobic009G017200--Sobic010G077500 Sobic009G017200--Sobic005G198200 Sobic008G021000 Sobic008G021000 Sobic006G224300--Sobic008G021000 Sobic004G084500 Sobic004G084500 Sobic006G224300--Sobic004G084500 Sobic006G224300--Sobic009G059400 Sobic006G224300--Sobic004G345400 Sobic006G224300--Sobic003G394200 Sobic009G040800 Sobic009G040800 Sobic006G224300--Sobic009G040800 Sobic006G224300--Sobic009G017200 Sobic002G115500 Sobic002G115500 Sobic006G224300--Sobic002G115500 Sobic006G203300 Sobic006G203300 Sobic006G224300--Sobic006G203300 Sobic001G017200--Sobic006G144000 Sobic001G017200--Sobic004G180900 Sobic001G017200--Sobic009G017200 Sobic001G017200--Sobic007G158900 Sobic004G042900 Sobic004G042900 Sobic001G017200--Sobic004G042900 Sobic001G017200--Sobic009G059400 Sobic007G192400 Sobic007G192400 Sobic001G017200--Sobic007G192400 Sobic001G017200--Sobic004G116600 Sobic001G017200--Sobic007G218600 Sobic003G004500 Sobic003G004500 Sobic007G018200--Sobic003G004500 Sobic001G517500 Sobic001G517500 Sobic007G018200--Sobic001G517500 Sobic001G005600 Sobic001G005600 Sobic007G018200--Sobic001G005600 Sobic004G160700 Sobic004G160700 Sobic007G018200--Sobic004G160700 Sobic007G046200 Sobic007G046200 Sobic007G018200--Sobic007G046200 Sobic004G068500 Sobic004G068500 Sobic007G018200--Sobic004G068500 Sobic007G018200--Sobic004G180900 Sobic002G277300 Sobic002G277300 Sobic007G018200--Sobic002G277300 Sobic008G160500 Sobic008G160500 Sobic007G018200--Sobic008G160500 Sobic001G202266 Sobic001G202266 Sobic004G116600--Sobic001G202266 Sobic001G287800 Sobic001G287800 Sobic004G116600--Sobic001G287800 Sobic004G116600--Sobic004G180900 Sobic006G130200 Sobic006G130200 Sobic004G116600--Sobic006G130200 Sobic005G049000 Sobic005G049000 Sobic004G116600--Sobic005G049000 Sobic004G116600--Sobic006G144000 Sobic004G218300 Sobic004G218300 Sobic004G116600--Sobic004G218300 Sobic004G116600--Sobic001G017200 Sobic004G116600--Sobic007G192400 Sobic006G046700 Sobic006G046700 Sobic001G405300--Sobic006G046700 Sobic001G405300--Sobic007G026000 Sobic002G159200 Sobic002G159200 Sobic001G405300--Sobic002G159200 Sobic006G161000 Sobic006G161000 Sobic001G405300--Sobic006G161000 Sobic005G059100 Sobic005G059100 Sobic001G405300--Sobic005G059100 Sobic007G043500 Sobic007G043500 Sobic001G405300--Sobic007G043500 Sobic006G013500 Sobic006G013500 Sobic001G405300--Sobic006G013500 Sobic001G405300--Sobic006G186400 Sobic004G031700 Sobic004G031700 Sobic001G405300--Sobic004G031700
Octagon: transcription factors


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