Gene annotation
Transcriptome id Sobic.007G018200.2
Synonym Sb07g001560, CID11
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1Z5R7Q3
Pfam PF07145 PF00076
Panther DB PTHR24012
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G32790 : CTC-interacting domain 11
RAP-DB (Rice) LOC_Os08g02330.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a030254 , Zm00025a054601 , Zm00025a003949 , Zm00025a045920 , Zm00025a040253
Brachypodium KQJ94870 , KQJ94871
Barley HORVU7Hr1G075450.10 , HORVU7Hr1G075450.11 , HORVU7Hr1G075450.12 , HORVU7Hr1G075450.13 , HORVU7Hr1G075450.14 , HORVU7Hr1G075450.15 , HORVU7Hr1G075450.16 , HORVU7Hr1G075450.17 , HORVU7Hr1G075450.18 , HORVU7Hr1G075450.19 , HORVU7Hr1G075450.24 , HORVU7Hr1G075450.21 , HORVU7Hr1G075450.20 , HORVU7Hr1G075450.23 , HORVU7Hr1G075450.22 , HORVU7Hr1G075450.2 , HORVU7Hr1G075450.3 , HORVU7Hr1G075450.6 , HORVU7Hr1G075450.7 , HORVU7Hr1G075450.8 , HORVU7Hr1G075450.9
Wheat TraesCS7A02G316900 , TraesCS7A02G316900 , TraesCS7A02G316900 , TraesCS7B02G218000 , TraesCS7B02G218000 , TraesCS7B02G218000 , TraesCS7B02G218000 , TraesCS7B02G218000 , TraesCS7D02G313900 , TraesCS7D02G313900 , TraesCS7D02G313900 , TraesCS7D02G313900
Populus PNT09054 , PNT09052 , PNT09053


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cDNA sequences
Sobic.007G018200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G004500 helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.001G517500 Ubiquitin family domain containing protein, expressed K04523: UBQLN, ubiquilin
3 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
4 Sobic.004G160700 TUDOR protein with multiple SNc domains, putative, expressed K15979: staphylococcal nuclease domain-containing protein 1
5 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
6 Sobic.004G068500 CUE domain containing protein, expressed -
7 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
8 Sobic.002G277300 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
9 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
10 Sobic.003G381600 ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
11 Sobic.009G137700 hydrolase, NUDIX family, domain containing protein, expressed K01823: idi, isopentenyl-diphosphate Delta-isomerase
12 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
13 Sobic.008G115000 Fibronectin type III domain containing protein, expressed -
14 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
15 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
16 Sobic.009G160600 Yip1 domain containing protein, expressed -
17 Sobic.009G125000 cyclin-dependent kinase C-1, putative, expressed K08819: cyclin-dependent kinase 12/13
18 Sobic.003G062400 PHD finger protein, putative, expressed -
19 Sobic.010G095700 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2
20 Sobic.008G021000 exostosin family domain containing protein, expressed -


Gene co-expression network
sample Sobic007G018200 Sobic007G018200 Sobic003G004500 Sobic003G004500 Sobic007G018200--Sobic003G004500 Sobic001G517500 Sobic001G517500 Sobic007G018200--Sobic001G517500 Sobic001G005600 Sobic001G005600 Sobic007G018200--Sobic001G005600 Sobic004G160700 Sobic004G160700 Sobic007G018200--Sobic004G160700 Sobic007G046200 Sobic007G046200 Sobic007G018200--Sobic007G046200 Sobic004G068500 Sobic004G068500 Sobic007G018200--Sobic004G068500 Sobic004G180900 Sobic004G180900 Sobic007G018200--Sobic004G180900 Sobic002G277300 Sobic002G277300 Sobic007G018200--Sobic002G277300 Sobic008G160500 Sobic008G160500 Sobic007G018200--Sobic008G160500 Sobic010G250900 Sobic010G250900 Sobic003G004500--Sobic010G250900 Sobic005G050600 Sobic005G050600 Sobic003G004500--Sobic005G050600 Sobic008G064250 Sobic008G064250 Sobic003G004500--Sobic008G064250 Sobic003G425600 Sobic003G425600 Sobic003G004500--Sobic003G425600 Sobic005G083160 Sobic005G083160 Sobic003G004500--Sobic005G083160 Sobic005G032400 Sobic005G032400 Sobic003G004500--Sobic005G032400 Sobic010G107300 Sobic010G107300 Sobic003G004500--Sobic010G107300 Sobic001G233900 Sobic001G233900 Sobic003G004500--Sobic001G233900 Sobic003G004500--Sobic007G018200 Sobic003G355000 Sobic003G355000 Sobic001G517500--Sobic003G355000 Sobic007G119200 Sobic007G119200 Sobic001G517500--Sobic007G119200 Sobic001G517500--Sobic007G046200 Sobic003G397800 Sobic003G397800 Sobic001G517500--Sobic003G397800 Sobic003G073000 Sobic003G073000 Sobic001G517500--Sobic003G073000 Sobic002G034600 Sobic002G034600 Sobic001G517500--Sobic002G034600 Sobic002G353600 Sobic002G353600 Sobic001G517500--Sobic002G353600 Sobic004G146500 Sobic004G146500 Sobic001G517500--Sobic004G146500 Sobic001G408700 Sobic001G408700 Sobic001G517500--Sobic001G408700 Sobic009G160600 Sobic009G160600 Sobic001G005600--Sobic009G160600 Sobic010G129600 Sobic010G129600 Sobic001G005600--Sobic010G129600 Sobic007G042900 Sobic007G042900 Sobic001G005600--Sobic007G042900 Sobic008G140400 Sobic008G140400 Sobic001G005600--Sobic008G140400 Sobic003G150900 Sobic003G150900 Sobic001G005600--Sobic003G150900 Sobic004G323700 Sobic004G323700 Sobic001G005600--Sobic004G323700 Sobic001G005600--Sobic004G068500 Sobic008G021000 Sobic008G021000 Sobic001G005600--Sobic008G021000 Sobic001G161900 Sobic001G161900 Sobic001G005600--Sobic001G161900 Sobic005G197100 Sobic005G197100 Sobic004G160700--Sobic005G197100 Sobic004G160700--Sobic003G004500 Sobic004G160700--Sobic007G018200 Sobic009G166600 Sobic009G166600 Sobic004G160700--Sobic009G166600 Sobic005G114800 Sobic005G114800 Sobic004G160700--Sobic005G114800 Sobic001G524000 Sobic001G524000 Sobic004G160700--Sobic001G524000 Sobic004G160700--Sobic008G160500 Sobic002G322400 Sobic002G322400 Sobic004G160700--Sobic002G322400 Sobic006G257600 Sobic006G257600 Sobic004G160700--Sobic006G257600 Sobic007G046200--Sobic001G517500 Sobic001G473600 Sobic001G473600 Sobic007G046200--Sobic001G473600 Sobic007G046200--Sobic002G034600 Sobic007G046200--Sobic007G119200 Sobic007G111100 Sobic007G111100 Sobic007G046200--Sobic007G111100 Sobic007G046200--Sobic003G355000 Sobic010G202600 Sobic010G202600 Sobic007G046200--Sobic010G202600 Sobic001G109800 Sobic001G109800 Sobic007G046200--Sobic001G109800 Sobic003G081000 Sobic003G081000 Sobic007G046200--Sobic003G081000 Sobic004G068500--Sobic007G111100 Sobic002G262700 Sobic002G262700 Sobic004G068500--Sobic002G262700 Sobic004G068500--Sobic001G005600 Sobic002G177000 Sobic002G177000 Sobic004G068500--Sobic002G177000 Sobic004G068500--Sobic007G046200 Sobic001G042200 Sobic001G042200 Sobic004G068500--Sobic001G042200 Sobic004G068500--Sobic007G042900 Sobic003G051200 Sobic003G051200 Sobic004G068500--Sobic003G051200 Sobic004G068500--Sobic001G517500 Sobic009G017200 Sobic009G017200 Sobic004G180900--Sobic009G017200 Sobic007G056500 Sobic007G056500 Sobic004G180900--Sobic007G056500 Sobic001G425000 Sobic001G425000 Sobic004G180900--Sobic001G425000 Sobic004G345400 Sobic004G345400 Sobic004G180900--Sobic004G345400 Sobic006G186400 Sobic006G186400 Sobic004G180900--Sobic006G186400 Sobic008G058800 Sobic008G058800 Sobic004G180900--Sobic008G058800 Sobic007G026000 Sobic007G026000 Sobic004G180900--Sobic007G026000 Sobic010G077500 Sobic010G077500 Sobic004G180900--Sobic010G077500 Sobic003G381600 Sobic003G381600 Sobic004G180900--Sobic003G381600 Sobic002G277300--Sobic004G068500 Sobic002G277300--Sobic007G018200 Sobic003G038600 Sobic003G038600 Sobic002G277300--Sobic003G038600 Sobic002G277300--Sobic007G111100 Sobic003G062400 Sobic003G062400 Sobic002G277300--Sobic003G062400 Sobic010G055800 Sobic010G055800 Sobic002G277300--Sobic010G055800 Sobic009G125000 Sobic009G125000 Sobic002G277300--Sobic009G125000 Sobic001G038100 Sobic001G038100 Sobic002G277300--Sobic001G038100 Sobic008G192000 Sobic008G192000 Sobic002G277300--Sobic008G192000 Sobic008G160500--Sobic003G062400 Sobic008G160500--Sobic001G005600 Sobic009G030400 Sobic009G030400 Sobic008G160500--Sobic009G030400 Sobic006G120800 Sobic006G120800 Sobic008G160500--Sobic006G120800 Sobic002G359900 Sobic002G359900 Sobic008G160500--Sobic002G359900 Sobic002G403200 Sobic002G403200 Sobic008G160500--Sobic002G403200 Sobic008G160500--Sobic003G004500 Sobic009G258400 Sobic009G258400 Sobic008G160500--Sobic009G258400 Sobic001G033400 Sobic001G033400 Sobic008G160500--Sobic001G033400
Octagon: transcription factors


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