Gene annotation
Transcriptome id Sobic.005G198200.1,Sobic.005G198200.2
Synonym Sb05g025540
Functional annotation F-box/LRR-repeat protein 3, putative, expressed
UniProt C5Y703 , A0A1Z5RJI5
Pfam PF13516
Panther DB PTHR24006 PTHR24006:SF435
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology K10268; F-box and leucine-rich repeat protein 2/20
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G15475 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os11g42160.1 : F-box/LRR-repeat protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a015902
Brachypodium KQJ87556
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G059400 expressed protein -
2 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
3 Sobic.009G137900 OsFBL9 - F-box domain and LRR containing protein, expressed -
4 Sobic.005G072400 expressed protein -
5 Sobic.009G017200 transporter family protein, putative, expressed K15276: SLC35B2, solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2
6 Sobic.001G472100 frigida, putative, expressed -
7 Sobic.008G111800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
8 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
9 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
10 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
11 Sobic.009G069200 glycine-rich protein, putative, expressed -
12 Sobic.003G343600 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.006G049100 expressed protein -
14 Sobic.002G390400 expressed protein -
15 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
16 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
17 Sobic.006G170700 START domain containing protein, putative, expressed -
18 Sobic.006G144000 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.007G187600 pentatricopeptide, putative, expressed -
20 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin


Gene co-expression network
sample Sobic005G198200 Sobic005G198200 Sobic009G059400 Sobic009G059400 Sobic005G198200--Sobic009G059400 Sobic009G113100 Sobic009G113100 Sobic005G198200--Sobic009G113100 Sobic009G137900 Sobic009G137900 Sobic005G198200--Sobic009G137900 Sobic005G072400 Sobic005G072400 Sobic005G198200--Sobic005G072400 Sobic009G017200 Sobic009G017200 Sobic005G198200--Sobic009G017200 Sobic001G472100 Sobic001G472100 Sobic005G198200--Sobic001G472100 Sobic008G111800 Sobic008G111800 Sobic005G198200--Sobic008G111800 Sobic004G180900 Sobic004G180900 Sobic005G198200--Sobic004G180900 Sobic010G077500 Sobic010G077500 Sobic005G198200--Sobic010G077500 Sobic009G059400--Sobic009G017200 Sobic009G059400--Sobic005G198200 Sobic007G218600 Sobic007G218600 Sobic009G059400--Sobic007G218600 Sobic006G144000 Sobic006G144000 Sobic009G059400--Sobic006G144000 Sobic003G393200 Sobic003G393200 Sobic009G059400--Sobic003G393200 Sobic009G125000 Sobic009G125000 Sobic009G059400--Sobic009G125000 Sobic004G345400 Sobic004G345400 Sobic009G059400--Sobic004G345400 Sobic007G148400 Sobic007G148400 Sobic009G059400--Sobic007G148400 Sobic006G224300 Sobic006G224300 Sobic009G059400--Sobic006G224300 Sobic009G069200 Sobic009G069200 Sobic009G113100--Sobic009G069200 Sobic001G090300 Sobic001G090300 Sobic009G113100--Sobic001G090300 Sobic009G113100--Sobic005G198200 Sobic001G004100 Sobic001G004100 Sobic009G113100--Sobic001G004100 Sobic002G208400 Sobic002G208400 Sobic009G113100--Sobic002G208400 Sobic007G187600 Sobic007G187600 Sobic009G113100--Sobic007G187600 Sobic003G214700 Sobic003G214700 Sobic009G113100--Sobic003G214700 Sobic001G013300 Sobic001G013300 Sobic009G113100--Sobic001G013300 Sobic006G061100 Sobic006G061100 Sobic009G113100--Sobic006G061100 Sobic009G137900--Sobic009G017200 Sobic009G137900--Sobic005G198200 Sobic003G051700 Sobic003G051700 Sobic009G137900--Sobic003G051700 Sobic006G278200 Sobic006G278200 Sobic009G137900--Sobic006G278200 Sobic009G137900--Sobic004G180900 Sobic009G137900--Sobic008G111800 Sobic001G426900 Sobic001G426900 Sobic009G137900--Sobic001G426900 Sobic009G137900--Sobic005G072400 Sobic003G343600 Sobic003G343600 Sobic009G137900--Sobic003G343600 Sobic005G072400--Sobic006G278200 Sobic002G253600 Sobic002G253600 Sobic005G072400--Sobic002G253600 Sobic005G072400--Sobic005G198200 Sobic005G072400--Sobic003G343600 Sobic005G072400--Sobic009G137900 Sobic001G230500 Sobic001G230500 Sobic005G072400--Sobic001G230500 Sobic003G415100 Sobic003G415100 Sobic005G072400--Sobic003G415100 Sobic002G159200 Sobic002G159200 Sobic005G072400--Sobic002G159200 Sobic006G261100 Sobic006G261100 Sobic005G072400--Sobic006G261100 Sobic009G017200--Sobic004G180900 Sobic009G017200--Sobic009G059400 Sobic009G017200--Sobic009G137900 Sobic008G058800 Sobic008G058800 Sobic009G017200--Sobic008G058800 Sobic009G017200--Sobic006G144000 Sobic001G425000 Sobic001G425000 Sobic009G017200--Sobic001G425000 Sobic001G042200 Sobic001G042200 Sobic009G017200--Sobic001G042200 Sobic009G017200--Sobic010G077500 Sobic009G017200--Sobic005G198200 Sobic005G040900 Sobic005G040900 Sobic001G472100--Sobic005G040900 Sobic001G472100--Sobic009G059400 Sobic001G472100--Sobic005G198200 Sobic001G472100--Sobic009G125000 Sobic001G472100--Sobic008G058800 Sobic001G472100--Sobic004G345400 Sobic009G129600 Sobic009G129600 Sobic001G472100--Sobic009G129600 Sobic007G139400 Sobic007G139400 Sobic001G472100--Sobic007G139400 Sobic003G354100 Sobic003G354100 Sobic001G472100--Sobic003G354100 Sobic008G111800--Sobic009G059400 Sobic003G365700 Sobic003G365700 Sobic008G111800--Sobic003G365700 Sobic008G111800--Sobic005G198200 Sobic008G111800--Sobic007G218600 Sobic008G111800--Sobic007G148400 Sobic008G111800--Sobic009G137900 Sobic009G186700 Sobic009G186700 Sobic008G111800--Sobic009G186700 Sobic008G111800--Sobic009G017200 Sobic001G025700 Sobic001G025700 Sobic008G111800--Sobic001G025700 Sobic004G180900--Sobic009G017200 Sobic007G056500 Sobic007G056500 Sobic004G180900--Sobic007G056500 Sobic004G180900--Sobic001G425000 Sobic004G180900--Sobic004G345400 Sobic006G186400 Sobic006G186400 Sobic004G180900--Sobic006G186400 Sobic004G180900--Sobic008G058800 Sobic007G026000 Sobic007G026000 Sobic004G180900--Sobic007G026000 Sobic004G180900--Sobic010G077500 Sobic003G381600 Sobic003G381600 Sobic004G180900--Sobic003G381600 Sobic010G077500--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic010G077500--Sobic006G049100 Sobic010G077500--Sobic004G345400 Sobic010G077500--Sobic007G187600 Sobic003G212900 Sobic003G212900 Sobic010G077500--Sobic003G212900 Sobic010G077500--Sobic008G058800 Sobic010G077500--Sobic007G056500 Sobic002G063900 Sobic002G063900 Sobic010G077500--Sobic002G063900 Sobic010G077500--Sobic009G129600
Octagon: transcription factors


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