Gene annotation
Transcriptome id Sobic.009G069200.2,Sobic.009G069200.1
Synonym Sb09g005780
Functional annotation glycine-rich protein, putative, expressed
UniProt C5YU95 , A0A1Z5R2A1
Pfam -
Panther DB PTHR31513 PTHR31513:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11700 : -
RAP-DB (Rice) LOC_Os01g09246.1 : glycine-rich protein, putative, expressed
MaizeGDB (Corn) Zm00025a035782 , Zm00025a043092 , Zm00025a023070
Brachypodium KQK07167 , KQK03094
Barley HORVU1Hr1G027850.17 , HORVU1Hr1G027850.14 , HORVU1Hr1G027850.13 , HORVU1Hr1G027850.12 , HORVU1Hr1G027850.11 , HORVU1Hr1G027850.10 , HORVU1Hr1G027850.19 , HORVU1Hr1G027850.18 , HORVU3Hr1G019920.1 , HORVU3Hr1G019920.2 , HORVU3Hr1G019920.3 , HORVU3Hr1G019920.5 , HORVU3Hr1G019920.6 , HORVU3Hr1G019920.7 , HORVU0Hr1G000390.8 , HORVU0Hr1G000390.9 , HORVU0Hr1G000390.2 , HORVU0Hr1G000390.3 , HORVU0Hr1G000390.1 , HORVU0Hr1G000390.6 , HORVU0Hr1G000390.7 , HORVU0Hr1G000390.4 , HORVU0Hr1G000390.5 , HORVU1Hr1G027850.24 , HORVU1Hr1G027850.22 , HORVU1Hr1G027850.23 , HORVU1Hr1G027850.20 , HORVU1Hr1G027850.21 , HORVU3Hr1G019920.9 , HORVU1Hr1G027850.9 , HORVU1Hr1G027850.8 , HORVU1Hr1G027850.7 , HORVU1Hr1G027850.5 , HORVU1Hr1G027850.4 , HORVU1Hr1G027850.3 , HORVU1Hr1G027850.2 , HORVU1Hr1G027850.1 , HORVU3Hr1G019920.4 , HORVU3Hr1G019920.8 , HORVU0Hr1G000390.18 , HORVU3Hr1G019920.10 , HORVU1Hr1G027850.6 , HORVU0Hr1G000390.10 , HORVU0Hr1G000390.11 , HORVU0Hr1G000390.12 , HORVU0Hr1G000390.13 , HORVU0Hr1G000390.14 , HORVU0Hr1G000390.15 , HORVU0Hr1G000390.16 , HORVU0Hr1G000390.17
Wheat TraesCS1B02G141300 , TraesCS3A02G109900 , TraesCS3D02G111600 , TraesCS3A02G109900 , TraesCS1D02G123100 , TraesCS3A02G109900 , TraesCS3A02G109900 , TraesCS1B02G141300 , TraesCS1B02G141300 , TraesCS1B02G141300 , TraesCS1A02G122100 , TraesCS3D02G111600 , TraesCS3B02G129000 , TraesCS3B02G129000
Populus PNS92879 , PNS92878


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
2 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
3 Sobic.010G038900 expressed protein -
4 Sobic.002G390400 expressed protein -
5 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
6 Sobic.002G315100 expressed protein K15083: DNA repair protein RAD16
7 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
8 Sobic.005G160200 sialyltransferase family domain containing protein, expressed -
9 Sobic.008G045800 PHD-finger family protein, expressed -
10 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
11 Sobic.003G010900 expressed protein -
12 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
13 Sobic.006G184200 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
14 Sobic.003G206600 glycine-rich protein, putative, expressed -
15 Sobic.004G350200 KH domain containing protein, putative, expressed K14944: RNA-binding protein Nova
16 Sobic.008G087200 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
17 Sobic.008G017900 expressed protein -
18 Sobic.002G354800 zinc finger family protein, putative, expressed -
19 Sobic.006G257600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05609: UCHL3, ubiquitin carboxyl-terminal hydrolase L3
20 Sobic.006G250100 tRNA-specific adenosine deaminase 1, putative, expressed K15440: TAD1, tRNA-specific adenosine deaminase 1


Gene co-expression network
sample Sobic009G069200 Sobic009G069200 Sobic009G113100 Sobic009G113100 Sobic009G069200--Sobic009G113100 Sobic003G415100 Sobic003G415100 Sobic009G069200--Sobic003G415100 Sobic010G038900 Sobic010G038900 Sobic009G069200--Sobic010G038900 Sobic002G390400 Sobic002G390400 Sobic009G069200--Sobic002G390400 Sobic005G198200 Sobic005G198200 Sobic009G069200--Sobic005G198200 Sobic002G315100 Sobic002G315100 Sobic009G069200--Sobic002G315100 Sobic001G090300 Sobic001G090300 Sobic009G069200--Sobic001G090300 Sobic005G160200 Sobic005G160200 Sobic009G069200--Sobic005G160200 Sobic008G045800 Sobic008G045800 Sobic009G069200--Sobic008G045800 Sobic009G113100--Sobic009G069200 Sobic009G113100--Sobic001G090300 Sobic009G113100--Sobic005G198200 Sobic001G004100 Sobic001G004100 Sobic009G113100--Sobic001G004100 Sobic002G208400 Sobic002G208400 Sobic009G113100--Sobic002G208400 Sobic007G187600 Sobic007G187600 Sobic009G113100--Sobic007G187600 Sobic003G214700 Sobic003G214700 Sobic009G113100--Sobic003G214700 Sobic001G013300 Sobic001G013300 Sobic009G113100--Sobic001G013300 Sobic006G061100 Sobic006G061100 Sobic009G113100--Sobic006G061100 Sobic001G346700 Sobic001G346700 Sobic003G415100--Sobic001G346700 Sobic003G415100--Sobic009G069200 Sobic003G415100--Sobic002G390400 Sobic009G257500 Sobic009G257500 Sobic003G415100--Sobic009G257500 Sobic003G415100--Sobic001G090300 Sobic001G123201 Sobic001G123201 Sobic003G415100--Sobic001G123201 Sobic006G126600 Sobic006G126600 Sobic003G415100--Sobic006G126600 Sobic006G091850 Sobic006G091850 Sobic003G415100--Sobic006G091850 Sobic003G253400 Sobic003G253400 Sobic003G415100--Sobic003G253400 Sobic006G184200 Sobic006G184200 Sobic010G038900--Sobic006G184200 Sobic002G066800 Sobic002G066800 Sobic010G038900--Sobic002G066800 Sobic004G350200 Sobic004G350200 Sobic010G038900--Sobic004G350200 Sobic008G087200 Sobic008G087200 Sobic010G038900--Sobic008G087200 Sobic010G257500 Sobic010G257500 Sobic010G038900--Sobic010G257500 Sobic010G018900 Sobic010G018900 Sobic010G038900--Sobic010G018900 Sobic010G038900--Sobic005G160200 Sobic004G063300 Sobic004G063300 Sobic010G038900--Sobic004G063300 Sobic010G009600 Sobic010G009600 Sobic010G038900--Sobic010G009600 Sobic001G135500 Sobic001G135500 Sobic002G390400--Sobic001G135500 Sobic002G390400--Sobic003G415100 Sobic002G390400--Sobic009G069200 Sobic002G390400--Sobic005G198200 Sobic005G030100 Sobic005G030100 Sobic002G390400--Sobic005G030100 Sobic009G030400 Sobic009G030400 Sobic002G390400--Sobic009G030400 Sobic002G390400--Sobic009G113100 Sobic008G156200 Sobic008G156200 Sobic002G390400--Sobic008G156200 Sobic001G429200 Sobic001G429200 Sobic002G390400--Sobic001G429200 Sobic009G059400 Sobic009G059400 Sobic005G198200--Sobic009G059400 Sobic005G198200--Sobic009G113100 Sobic009G137900 Sobic009G137900 Sobic005G198200--Sobic009G137900 Sobic005G072400 Sobic005G072400 Sobic005G198200--Sobic005G072400 Sobic009G017200 Sobic009G017200 Sobic005G198200--Sobic009G017200 Sobic001G472100 Sobic001G472100 Sobic005G198200--Sobic001G472100 Sobic008G111800 Sobic008G111800 Sobic005G198200--Sobic008G111800 Sobic004G180900 Sobic004G180900 Sobic005G198200--Sobic004G180900 Sobic010G077500 Sobic010G077500 Sobic005G198200--Sobic010G077500 Sobic002G354800 Sobic002G354800 Sobic002G315100--Sobic002G354800 Sobic002G315100--Sobic006G091850 Sobic002G315100--Sobic005G160200 Sobic003G055200 Sobic003G055200 Sobic002G315100--Sobic003G055200 Sobic002G230400 Sobic002G230400 Sobic002G315100--Sobic002G230400 Sobic004G014100 Sobic004G014100 Sobic002G315100--Sobic004G014100 Sobic006G143300 Sobic006G143300 Sobic002G315100--Sobic006G143300 Sobic002G315100--Sobic009G069200 Sobic002G315100--Sobic006G184200 Sobic005G199200 Sobic005G199200 Sobic001G090300--Sobic005G199200 Sobic001G090300--Sobic009G113100 Sobic005G040900 Sobic005G040900 Sobic001G090300--Sobic005G040900 Sobic001G090300--Sobic003G415100 Sobic009G074700 Sobic009G074700 Sobic001G090300--Sobic009G074700 Sobic001G090300--Sobic007G187600 Sobic009G129600 Sobic009G129600 Sobic001G090300--Sobic009G129600 Sobic009G000400 Sobic009G000400 Sobic001G090300--Sobic009G000400 Sobic001G334100 Sobic001G334100 Sobic001G090300--Sobic001G334100 Sobic005G160200--Sobic004G014100 Sobic003G411700 Sobic003G411700 Sobic005G160200--Sobic003G411700 Sobic003G343200 Sobic003G343200 Sobic005G160200--Sobic003G343200 Sobic005G160200--Sobic006G091850 Sobic005G160200--Sobic002G315100 Sobic005G160200--Sobic010G038900 Sobic005G160200--Sobic010G257500 Sobic001G534400 Sobic001G534400 Sobic005G160200--Sobic001G534400 Sobic005G160200--Sobic004G350200 Sobic001G005800 Sobic001G005800 Sobic008G045800--Sobic001G005800 Sobic008G045800--Sobic009G257500 Sobic008G045800--Sobic004G014100 Sobic010G262900 Sobic010G262900 Sobic008G045800--Sobic010G262900 Sobic010G180200 Sobic010G180200 Sobic008G045800--Sobic010G180200 Sobic006G200901 Sobic006G200901 Sobic008G045800--Sobic006G200901 Sobic008G045800--Sobic002G230400 Sobic010G236200 Sobic010G236200 Sobic008G045800--Sobic010G236200 Sobic004G075700 Sobic004G075700 Sobic008G045800--Sobic004G075700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.