Gene annotation
Transcriptome id Sobic.006G250100.1
Synonym Sb06g031520
Functional annotation tRNA-specific adenosine deaminase 1, putative, expressed
UniProt C5Y9K9
Pfam PF02137
Panther DB PTHR10910
NCBI CDD -
KEGG Orthology K15440; TAD1, tRNA-specific adenosine deaminase 1
Gene Ontology GO:0006396; RNA processing GO:0004000adenosine deaminase activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT1G01760 : adenosine deaminases;RNA binding;RNA binding;adenosine deaminases
RAP-DB (Rice) LOC_Os04g58690.1 : tRNA-specific adenosine deaminase 1, putative, expressed
MaizeGDB (Corn) Zm00025a028417 , Zm00025a009453
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G250100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
2 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
3 Sobic.008G056200 OsFBX238 - F-box domain containing protein, expressed -
4 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
5 Sobic.009G069200 glycine-rich protein, putative, expressed -
6 Sobic.006G126600 Trihelix Family(PubMedID : 24864043)@MYB family transcription factor, putative, expressed -
7 Sobic.003G412100 aspartokinase 3, chloroplast precursor, putative, expressed K00928: aspartate kinase
8 Sobic.001G522400 FHA domain containing protein, putative, expressed -
9 Sobic.001G228400 OsFBX217 - F-box domain containing protein, expressed -
10 Sobic.010G262900 expressed protein -
11 Sobic.003G010900 expressed protein -
12 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
13 Sobic.005G160200 sialyltransferase family domain containing protein, expressed -
14 Sobic.006G242401 - -
15 Sobic.010G235700 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
16 Sobic.007G018700 kinesin motor domain containing protein, putative, expressed -
17 Sobic.002G268900 flap endonuclease, putative, expressed K15338: GEN1, flap endonuclease GEN
18 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
19 Sobic.009G257500 expressed protein -
20 Sobic.010G189100 expressed protein -


Gene co-expression network
sample Sobic006G250100 Sobic006G250100 Sobic003G415100 Sobic003G415100 Sobic006G250100--Sobic003G415100 Sobic001G090300 Sobic001G090300 Sobic006G250100--Sobic001G090300 Sobic008G056200 Sobic008G056200 Sobic006G250100--Sobic008G056200 Sobic003G244700 Sobic003G244700 Sobic006G250100--Sobic003G244700 Sobic009G069200 Sobic009G069200 Sobic006G250100--Sobic009G069200 Sobic006G126600 Sobic006G126600 Sobic006G250100--Sobic006G126600 Sobic003G412100 Sobic003G412100 Sobic006G250100--Sobic003G412100 Sobic001G522400 Sobic001G522400 Sobic006G250100--Sobic001G522400 Sobic001G228400 Sobic001G228400 Sobic006G250100--Sobic001G228400 Sobic001G346700 Sobic001G346700 Sobic003G415100--Sobic001G346700 Sobic003G415100--Sobic009G069200 Sobic002G390400 Sobic002G390400 Sobic003G415100--Sobic002G390400 Sobic009G257500 Sobic009G257500 Sobic003G415100--Sobic009G257500 Sobic003G415100--Sobic001G090300 Sobic001G123201 Sobic001G123201 Sobic003G415100--Sobic001G123201 Sobic003G415100--Sobic006G126600 Sobic006G091850 Sobic006G091850 Sobic003G415100--Sobic006G091850 Sobic003G253400 Sobic003G253400 Sobic003G415100--Sobic003G253400 Sobic005G199200 Sobic005G199200 Sobic001G090300--Sobic005G199200 Sobic009G113100 Sobic009G113100 Sobic001G090300--Sobic009G113100 Sobic005G040900 Sobic005G040900 Sobic001G090300--Sobic005G040900 Sobic001G090300--Sobic003G415100 Sobic009G074700 Sobic009G074700 Sobic001G090300--Sobic009G074700 Sobic007G187600 Sobic007G187600 Sobic001G090300--Sobic007G187600 Sobic009G129600 Sobic009G129600 Sobic001G090300--Sobic009G129600 Sobic009G000400 Sobic009G000400 Sobic001G090300--Sobic009G000400 Sobic001G334100 Sobic001G334100 Sobic001G090300--Sobic001G334100 Sobic008G056200--Sobic006G126600 Sobic008G056200--Sobic009G257500 Sobic008G045800 Sobic008G045800 Sobic008G056200--Sobic008G045800 Sobic008G056200--Sobic006G250100 Sobic010G189100 Sobic010G189100 Sobic008G056200--Sobic010G189100 Sobic002G354800 Sobic002G354800 Sobic008G056200--Sobic002G354800 Sobic008G056200--Sobic001G228400 Sobic009G032200 Sobic009G032200 Sobic008G056200--Sobic009G032200 Sobic008G056200--Sobic003G415100 Sobic006G203200 Sobic006G203200 Sobic003G244700--Sobic006G203200 Sobic002G253600 Sobic002G253600 Sobic003G244700--Sobic002G253600 Sobic002G019600 Sobic002G019600 Sobic003G244700--Sobic002G019600 Sobic002G050500 Sobic002G050500 Sobic003G244700--Sobic002G050500 Sobic002G362300 Sobic002G362300 Sobic003G244700--Sobic002G362300 Sobic001G371000 Sobic001G371000 Sobic003G244700--Sobic001G371000 Sobic010G235500 Sobic010G235500 Sobic003G244700--Sobic010G235500 Sobic002G016900 Sobic002G016900 Sobic003G244700--Sobic002G016900 Sobic001G384600 Sobic001G384600 Sobic003G244700--Sobic001G384600 Sobic009G069200--Sobic009G113100 Sobic009G069200--Sobic003G415100 Sobic010G038900 Sobic010G038900 Sobic009G069200--Sobic010G038900 Sobic009G069200--Sobic002G390400 Sobic005G198200 Sobic005G198200 Sobic009G069200--Sobic005G198200 Sobic002G315100 Sobic002G315100 Sobic009G069200--Sobic002G315100 Sobic009G069200--Sobic001G090300 Sobic005G160200 Sobic005G160200 Sobic009G069200--Sobic005G160200 Sobic009G069200--Sobic008G045800 Sobic006G126600--Sobic009G257500 Sobic004G207000 Sobic004G207000 Sobic006G126600--Sobic004G207000 Sobic006G126600--Sobic008G056200 Sobic009G031500 Sobic009G031500 Sobic006G126600--Sobic009G031500 Sobic009G192500 Sobic009G192500 Sobic006G126600--Sobic009G192500 Sobic006G126600--Sobic003G415100 Sobic007G125700 Sobic007G125700 Sobic006G126600--Sobic007G125700 Sobic005G177900 Sobic005G177900 Sobic006G126600--Sobic005G177900 Sobic002G302600 Sobic002G302600 Sobic006G126600--Sobic002G302600 Sobic003G412100--Sobic003G244700 Sobic002G334600 Sobic002G334600 Sobic003G412100--Sobic002G334600 Sobic003G412100--Sobic010G235500 Sobic003G184400 Sobic003G184400 Sobic003G412100--Sobic003G184400 Sobic003G412100--Sobic005G040900 Sobic002G105000 Sobic002G105000 Sobic003G412100--Sobic002G105000 Sobic005G009200 Sobic005G009200 Sobic003G412100--Sobic005G009200 Sobic003G412100--Sobic002G362300 Sobic003G412100--Sobic001G346700 Sobic002G268900 Sobic002G268900 Sobic001G522400--Sobic002G268900 Sobic004G085300 Sobic004G085300 Sobic001G522400--Sobic004G085300 Sobic001G448100 Sobic001G448100 Sobic001G522400--Sobic001G448100 Sobic001G522400--Sobic009G129600 Sobic001G522400--Sobic009G000400 Sobic002G079100 Sobic002G079100 Sobic001G522400--Sobic002G079100 Sobic006G210200 Sobic006G210200 Sobic001G522400--Sobic006G210200 Sobic001G522400--Sobic001G090300 Sobic007G000400 Sobic007G000400 Sobic001G522400--Sobic007G000400 Sobic001G228400--Sobic001G384600 Sobic001G228400--Sobic005G177900 Sobic001G228400--Sobic006G126600 Sobic002G341100 Sobic002G341100 Sobic001G228400--Sobic002G341100 Sobic010G262900 Sobic010G262900 Sobic001G228400--Sobic010G262900 Sobic001G228400--Sobic008G056200 Sobic001G228400--Sobic006G250100 Sobic003G014900 Sobic003G014900 Sobic001G228400--Sobic003G014900 Sobic003G035500 Sobic003G035500 Sobic001G228400--Sobic003G035500
Octagon: transcription factors


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