Gene annotation
Transcriptome id Sobic.001G522400.1
Synonym Sb01g048700
Functional annotation FHA domain containing protein, putative, expressed
UniProt C5X002
Pfam PF00498
Panther DB PTHR12348 PTHR12348:SF15
NCBI CDD KOG1853; LIS1-interacting protein NUDE
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT2G45460 : SMAD/FHA domain-containing protein
RAP-DB (Rice) LOC_Os03g03560.1 : FHA domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a053475 , Zm00025a000365 , Zm00025a053258 , Zm00025a046452
Brachypodium KQK23874 , KQK23873
Barley HORVU4Hr1G083010.4 , HORVU4Hr1G083010.5 , HORVU4Hr1G083010.6 , HORVU4Hr1G083010.7 , HORVU4Hr1G083010.1 , HORVU4Hr1G083010.2 , HORVU4Hr1G083010.3 , HORVU4Hr1G083010.8 , HORVU4Hr1G083010.9 , HORVU4Hr1G083010.16 , HORVU4Hr1G083010.17 , HORVU4Hr1G083010.14 , HORVU4Hr1G083010.15 , HORVU4Hr1G083010.12 , HORVU4Hr1G083010.10 , HORVU4Hr1G083010.11 , HORVU4Hr1G083010.18
Wheat TraesCS4B02G320500 , TraesCS4B02G320500 , TraesCS4D02G317000 , TraesCS4D02G317000 , TraesCS5A02G491500 , TraesCS5A02G491500 , TraesCS5A02G491500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G268900 flap endonuclease, putative, expressed K15338: GEN1, flap endonuclease GEN
2 Sobic.004G085300 Sel1 repeat domain containing protein, putative, expressed -
3 Sobic.001G448100 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
4 Sobic.009G129600 ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed -
5 Sobic.009G000400 expressed protein -
6 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
7 Sobic.006G210200 zinc finger domain, LSD1 subclass family protein, expressed -
8 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
9 Sobic.007G000400 B3 DNA binding domain containing protein, expressed -
10 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
11 Sobic.003G343600 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.005G030400 cytochrome P450, putative, expressed K09588: CYP90A1, cytochrome P450 family 90 subfamily A polypeptide 1
13 Sobic.004G347100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
14 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
15 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
16 Sobic.006G126600 Trihelix Family(PubMedID : 24864043)@MYB family transcription factor, putative, expressed -
17 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
18 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
19 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
20 Sobic.002G235900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G522400 Sobic001G522400 Sobic002G268900 Sobic002G268900 Sobic001G522400--Sobic002G268900 Sobic004G085300 Sobic004G085300 Sobic001G522400--Sobic004G085300 Sobic001G448100 Sobic001G448100 Sobic001G522400--Sobic001G448100 Sobic009G129600 Sobic009G129600 Sobic001G522400--Sobic009G129600 Sobic009G000400 Sobic009G000400 Sobic001G522400--Sobic009G000400 Sobic002G079100 Sobic002G079100 Sobic001G522400--Sobic002G079100 Sobic006G210200 Sobic006G210200 Sobic001G522400--Sobic006G210200 Sobic001G090300 Sobic001G090300 Sobic001G522400--Sobic001G090300 Sobic007G000400 Sobic007G000400 Sobic001G522400--Sobic007G000400 Sobic002G033600 Sobic002G033600 Sobic002G268900--Sobic002G033600 Sobic002G268900--Sobic001G522400 Sobic010G237650 Sobic010G237650 Sobic002G268900--Sobic010G237650 Sobic002G268900--Sobic004G085300 Sobic002G268900--Sobic009G129600 Sobic004G347100 Sobic004G347100 Sobic002G268900--Sobic004G347100 Sobic007G139400 Sobic007G139400 Sobic002G268900--Sobic007G139400 Sobic003G343600 Sobic003G343600 Sobic002G268900--Sobic003G343600 Sobic001G346700 Sobic001G346700 Sobic002G268900--Sobic001G346700 Sobic009G151200 Sobic009G151200 Sobic004G085300--Sobic009G151200 Sobic002G223300 Sobic002G223300 Sobic004G085300--Sobic002G223300 Sobic004G085300--Sobic001G522400 Sobic004G085300--Sobic002G268900 Sobic004G086200 Sobic004G086200 Sobic004G085300--Sobic004G086200 Sobic002G421700 Sobic002G421700 Sobic004G085300--Sobic002G421700 Sobic002G259800 Sobic002G259800 Sobic004G085300--Sobic002G259800 Sobic004G285000 Sobic004G285000 Sobic004G085300--Sobic004G285000 Sobic004G085300--Sobic006G210200 Sobic001G448100--Sobic002G079100 Sobic003G397100 Sobic003G397100 Sobic001G448100--Sobic003G397100 Sobic004G007900 Sobic004G007900 Sobic001G448100--Sobic004G007900 Sobic002G235900 Sobic002G235900 Sobic001G448100--Sobic002G235900 Sobic002G380100 Sobic002G380100 Sobic001G448100--Sobic002G380100 Sobic009G154900 Sobic009G154900 Sobic001G448100--Sobic009G154900 Sobic001G448100--Sobic001G522400 Sobic001G448100--Sobic009G000400 Sobic003G067201 Sobic003G067201 Sobic001G448100--Sobic003G067201 Sobic008G058800 Sobic008G058800 Sobic009G129600--Sobic008G058800 Sobic010G077500 Sobic010G077500 Sobic009G129600--Sobic010G077500 Sobic009G129600--Sobic001G346700 Sobic006G248500 Sobic006G248500 Sobic009G129600--Sobic006G248500 Sobic009G040800 Sobic009G040800 Sobic009G129600--Sobic009G040800 Sobic002G063900 Sobic002G063900 Sobic009G129600--Sobic002G063900 Sobic008G100100 Sobic008G100100 Sobic009G129600--Sobic008G100100 Sobic002G357100 Sobic002G357100 Sobic009G129600--Sobic002G357100 Sobic002G148400 Sobic002G148400 Sobic009G129600--Sobic002G148400 Sobic009G074700 Sobic009G074700 Sobic009G000400--Sobic009G074700 Sobic006G028700 Sobic006G028700 Sobic009G000400--Sobic006G028700 Sobic009G000400--Sobic009G040800 Sobic006G180700 Sobic006G180700 Sobic009G000400--Sobic006G180700 Sobic002G115500 Sobic002G115500 Sobic009G000400--Sobic002G115500 Sobic007G026000 Sobic007G026000 Sobic009G000400--Sobic007G026000 Sobic005G040900 Sobic005G040900 Sobic009G000400--Sobic005G040900 Sobic010G279900 Sobic010G279900 Sobic009G000400--Sobic010G279900 Sobic001G085700 Sobic001G085700 Sobic009G000400--Sobic001G085700 Sobic003G124600 Sobic003G124600 Sobic002G079100--Sobic003G124600 Sobic002G079100--Sobic001G448100 Sobic008G017100 Sobic008G017100 Sobic002G079100--Sobic008G017100 Sobic008G080500 Sobic008G080500 Sobic002G079100--Sobic008G080500 Sobic002G079100--Sobic002G380100 Sobic002G292800 Sobic002G292800 Sobic002G079100--Sobic002G292800 Sobic010G278600 Sobic010G278600 Sobic002G079100--Sobic010G278600 Sobic006G245900 Sobic006G245900 Sobic002G079100--Sobic006G245900 Sobic001G482200 Sobic001G482200 Sobic002G079100--Sobic001G482200 Sobic002G050500 Sobic002G050500 Sobic006G210200--Sobic002G050500 Sobic001G454301 Sobic001G454301 Sobic006G210200--Sobic001G454301 Sobic002G151600 Sobic002G151600 Sobic006G210200--Sobic002G151600 Sobic003G023400 Sobic003G023400 Sobic006G210200--Sobic003G023400 Sobic002G157200 Sobic002G157200 Sobic006G210200--Sobic002G157200 Sobic003G185250 Sobic003G185250 Sobic006G210200--Sobic003G185250 Sobic002G060450 Sobic002G060450 Sobic006G210200--Sobic002G060450 Sobic001G303675 Sobic001G303675 Sobic006G210200--Sobic001G303675 Sobic009G239351 Sobic009G239351 Sobic006G210200--Sobic009G239351 Sobic005G199200 Sobic005G199200 Sobic001G090300--Sobic005G199200 Sobic009G113100 Sobic009G113100 Sobic001G090300--Sobic009G113100 Sobic001G090300--Sobic005G040900 Sobic003G415100 Sobic003G415100 Sobic001G090300--Sobic003G415100 Sobic001G090300--Sobic009G074700 Sobic007G187600 Sobic007G187600 Sobic001G090300--Sobic007G187600 Sobic001G090300--Sobic009G129600 Sobic001G090300--Sobic009G000400 Sobic001G334100 Sobic001G334100 Sobic001G090300--Sobic001G334100 Sobic008G056900 Sobic008G056900 Sobic007G000400--Sobic008G056900 Sobic007G000400--Sobic001G522400 Sobic006G242401 Sobic006G242401 Sobic007G000400--Sobic006G242401 Sobic001G045700 Sobic001G045700 Sobic007G000400--Sobic001G045700 Sobic009G096100 Sobic009G096100 Sobic007G000400--Sobic009G096100 Sobic007G000400--Sobic002G380100 Sobic004G128200 Sobic004G128200 Sobic007G000400--Sobic004G128200 Sobic003G163100 Sobic003G163100 Sobic007G000400--Sobic003G163100 Sobic010G143200 Sobic010G143200 Sobic007G000400--Sobic010G143200
Octagon: transcription factors


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