Gene annotation
Transcriptome id Sobic.007G000400.1
Synonym SIS10, Sb07g000220, ABI3
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt C5YLC1
Pfam PF02362
Panther DB PTHR31140 PTHR31140:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G24650 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os08g01090.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a033659 , Zm00025a040102
Brachypodium -
Barley HORVU7Hr1G078770.8 , HORVU7Hr1G078770.9 , HORVU7Hr1G078770.5 , HORVU7Hr1G078770.7 , HORVU7Hr1G078770.1 , HORVU7Hr1G078770.3
Wheat TraesCS7B02G230100 , TraesCS7B02G230100 , TraesCS7B02G230100 , TraesCS7D02G326300 , TraesCS7A02G329600 , TraesCS7A02G329600 , TraesCS7D02G326300 , TraesCS7D02G326300
Populus -


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cDNA sequences
Sobic.007G000400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
2 Sobic.001G522400 FHA domain containing protein, putative, expressed -
3 Sobic.006G242401 - -
4 Sobic.001G045700 "CESA3-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA2 - cellulose synthase, expressed K10999: cellulose synthase A
5 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
6 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
7 Sobic.004G128200 Probable LRR receptor-like serine/threonine-protein kinase At5g10290(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
8 Sobic.003G163100 expressed protein K08819: cyclin-dependent kinase 12/13
9 Sobic.010G143200 - -
10 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
11 Sobic.006G006500 MBTB44 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
12 Sobic.008G125100 Mur ligase family protein, putative, expressed -
13 Sobic.006G028700 expressed protein -
14 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
15 Sobic.005G030400 cytochrome P450, putative, expressed K09588: CYP90A1, cytochrome P450 family 90 subfamily A polypeptide 1
16 Sobic.007G043900 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
17 Sobic.003G185250 - -
18 Sobic.010G157700 expressed protein -
19 Sobic.006G210200 zinc finger domain, LSD1 subclass family protein, expressed -
20 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -


Gene co-expression network
sample Sobic007G000400 Sobic007G000400 Sobic008G056900 Sobic008G056900 Sobic007G000400--Sobic008G056900 Sobic001G522400 Sobic001G522400 Sobic007G000400--Sobic001G522400 Sobic006G242401 Sobic006G242401 Sobic007G000400--Sobic006G242401 Sobic001G045700 Sobic001G045700 Sobic007G000400--Sobic001G045700 Sobic009G096100 Sobic009G096100 Sobic007G000400--Sobic009G096100 Sobic002G380100 Sobic002G380100 Sobic007G000400--Sobic002G380100 Sobic004G128200 Sobic004G128200 Sobic007G000400--Sobic004G128200 Sobic003G163100 Sobic003G163100 Sobic007G000400--Sobic003G163100 Sobic010G143200 Sobic010G143200 Sobic007G000400--Sobic010G143200 Sobic008G056900--Sobic009G096100 Sobic001G485600 Sobic001G485600 Sobic008G056900--Sobic001G485600 Sobic008G081600 Sobic008G081600 Sobic008G056900--Sobic008G081600 Sobic008G056900--Sobic007G000400 Sobic002G344500 Sobic002G344500 Sobic008G056900--Sobic002G344500 Sobic007G197400 Sobic007G197400 Sobic008G056900--Sobic007G197400 Sobic004G227100 Sobic004G227100 Sobic008G056900--Sobic004G227100 Sobic007G077700 Sobic007G077700 Sobic008G056900--Sobic007G077700 Sobic001G087100 Sobic001G087100 Sobic008G056900--Sobic001G087100 Sobic002G268900 Sobic002G268900 Sobic001G522400--Sobic002G268900 Sobic004G085300 Sobic004G085300 Sobic001G522400--Sobic004G085300 Sobic001G448100 Sobic001G448100 Sobic001G522400--Sobic001G448100 Sobic009G129600 Sobic009G129600 Sobic001G522400--Sobic009G129600 Sobic009G000400 Sobic009G000400 Sobic001G522400--Sobic009G000400 Sobic002G079100 Sobic002G079100 Sobic001G522400--Sobic002G079100 Sobic006G210200 Sobic006G210200 Sobic001G522400--Sobic006G210200 Sobic001G090300 Sobic001G090300 Sobic001G522400--Sobic001G090300 Sobic001G522400--Sobic007G000400 Sobic006G242401--Sobic007G000400 Sobic006G250100 Sobic006G250100 Sobic006G242401--Sobic006G250100 Sobic006G248500 Sobic006G248500 Sobic006G242401--Sobic006G248500 Sobic002G408600 Sobic002G408600 Sobic006G242401--Sobic002G408600 Sobic006G242401--Sobic001G522400 Sobic001G469800 Sobic001G469800 Sobic006G242401--Sobic001G469800 Sobic002G224700 Sobic002G224700 Sobic006G242401--Sobic002G224700 Sobic007G026000 Sobic007G026000 Sobic006G242401--Sobic007G026000 Sobic005G009200 Sobic005G009200 Sobic006G242401--Sobic005G009200 Sobic002G157200 Sobic002G157200 Sobic001G045700--Sobic002G157200 Sobic007G224900 Sobic007G224900 Sobic001G045700--Sobic007G224900 Sobic003G185250 Sobic003G185250 Sobic001G045700--Sobic003G185250 Sobic006G006500 Sobic006G006500 Sobic001G045700--Sobic006G006500 Sobic002G049000 Sobic002G049000 Sobic001G045700--Sobic002G049000 Sobic002G060450 Sobic002G060450 Sobic001G045700--Sobic002G060450 Sobic002G050500 Sobic002G050500 Sobic001G045700--Sobic002G050500 Sobic002G297800 Sobic002G297800 Sobic001G045700--Sobic002G297800 Sobic010G208500 Sobic010G208500 Sobic001G045700--Sobic010G208500 Sobic009G096100--Sobic008G056900 Sobic002G192500 Sobic002G192500 Sobic009G096100--Sobic002G192500 Sobic010G157700 Sobic010G157700 Sobic009G096100--Sobic010G157700 Sobic009G096100--Sobic001G485600 Sobic006G056000 Sobic006G056000 Sobic009G096100--Sobic006G056000 Sobic007G043900 Sobic007G043900 Sobic009G096100--Sobic007G043900 Sobic009G096100--Sobic002G344500 Sobic009G096100--Sobic002G380100 Sobic009G096100--Sobic007G077700 Sobic002G380100--Sobic002G079100 Sobic004G119400 Sobic004G119400 Sobic002G380100--Sobic004G119400 Sobic008G017100 Sobic008G017100 Sobic002G380100--Sobic008G017100 Sobic006G111200 Sobic006G111200 Sobic002G380100--Sobic006G111200 Sobic002G380100--Sobic001G448100 Sobic002G380100--Sobic003G185250 Sobic003G070100 Sobic003G070100 Sobic002G380100--Sobic003G070100 Sobic010G050700 Sobic010G050700 Sobic002G380100--Sobic010G050700 Sobic002G380100--Sobic009G096100 Sobic005G199200 Sobic005G199200 Sobic004G128200--Sobic005G199200 Sobic001G367100 Sobic001G367100 Sobic004G128200--Sobic001G367100 Sobic010G279900 Sobic010G279900 Sobic004G128200--Sobic010G279900 Sobic001G315400 Sobic001G315400 Sobic004G128200--Sobic001G315400 Sobic003G409200 Sobic003G409200 Sobic004G128200--Sobic003G409200 Sobic004G128200--Sobic001G090300 Sobic002G145800 Sobic002G145800 Sobic004G128200--Sobic002G145800 Sobic007G183300 Sobic007G183300 Sobic004G128200--Sobic007G183300 Sobic004G128200--Sobic008G017100 Sobic006G210100 Sobic006G210100 Sobic003G163100--Sobic006G210100 Sobic001G360900 Sobic001G360900 Sobic003G163100--Sobic001G360900 Sobic001G253200 Sobic001G253200 Sobic003G163100--Sobic001G253200 Sobic001G303675 Sobic001G303675 Sobic003G163100--Sobic001G303675 Sobic009G251300 Sobic009G251300 Sobic003G163100--Sobic009G251300 Sobic006G191400 Sobic006G191400 Sobic003G163100--Sobic006G191400 Sobic002G151600 Sobic002G151600 Sobic003G163100--Sobic002G151600 Sobic003G163100--Sobic003G185250 Sobic009G045700 Sobic009G045700 Sobic003G163100--Sobic009G045700 Sobic007G112900 Sobic007G112900 Sobic010G143200--Sobic007G112900 Sobic003G159450 Sobic003G159450 Sobic010G143200--Sobic003G159450 Sobic001G261496 Sobic001G261496 Sobic010G143200--Sobic001G261496 Sobic001G191100 Sobic001G191100 Sobic010G143200--Sobic001G191100 Sobic008G000900 Sobic008G000900 Sobic010G143200--Sobic008G000900 Sobic004G096500 Sobic004G096500 Sobic010G143200--Sobic004G096500 Sobic008G125600 Sobic008G125600 Sobic010G143200--Sobic008G125600 Sobic008G091671 Sobic008G091671 Sobic010G143200--Sobic008G091671 Sobic009G178800 Sobic009G178800 Sobic010G143200--Sobic009G178800
Octagon: transcription factors


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