Gene annotation
Transcriptome id Sobic.004G128200.3
Synonym SORBIDRAFT_04g011060, SORBI_3004G128200, Sb04g011060
Functional annotation Probable LRR receptor-like serine/threonine-protein kinase At5g10290 (PubMedID : 31721651)
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
UniProt C5Y047
Pfam PF08263 PF00069
Panther DB PTHR27001 PTHR27001:SF33
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G10290 : leucine-rich repeat transmembrane protein kinase family protein
RAP-DB (Rice) LOC_Os02g18320.1 : BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a019776 , Zm00025a020793 , Zm00025a007761
Brachypodium KQJ94416 , KQJ94417
Barley HORVU3Hr1G073960.8 , HORVU3Hr1G073960.5 , HORVU3Hr1G073960.3 , HORVU3Hr1G073960.18 , HORVU3Hr1G073960.19 , HORVU3Hr1G073960.17 , HORVU3Hr1G073960.14 , HORVU3Hr1G073960.15 , HORVU3Hr1G073960.12 , HORVU3Hr1G073960.13 , HORVU3Hr1G073960.10 , HORVU3Hr1G073960.11 , HORVU3Hr1G073960.16 , HORVU3Hr1G073960.21 , HORVU3Hr1G073960.20 , HORVU3Hr1G073960.9 , HORVU3Hr1G073960.4 , HORVU3Hr1G073960.6 , HORVU3Hr1G073960.7 , HORVU3Hr1G073960.1 , HORVU3Hr1G073960.2
Wheat TraesCS3A02G302200 , TraesCS3A02G302200 , TraesCS3B02G334400 , TraesCS3B02G334400 , TraesCS5A02G351500 , TraesCS3D02G299800 , TraesCS3D02G299800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
2 Sobic.001G367100 pleckstrin homology domain-containing protein, putative, expressed -
3 Sobic.010G279900 PHD-finger domain containing protein, expressed -
4 Sobic.001G315400 expressed protein -
5 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
6 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
7 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
8 Sobic.007G183300 expressed protein -
9 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
10 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
11 Sobic.007G044100 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
12 Sobic.007G201800 DNA repair ATPase-related, putative, expressed -
13 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
14 Sobic.010G215900 type II intron maturase protein, putative, expressed -
15 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
16 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
17 Sobic.008G147200 tubulin, putative, expressed -
18 Sobic.004G178400 zinc finger, C3HC4 type domain containing protein, expressed K19039: E3 ubiquitin-protein ligase ATL7/58/59
19 Sobic.007G000400 B3 DNA binding domain containing protein, expressed -
20 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT


Gene co-expression network
sample Sobic004G128200 Sobic004G128200 Sobic005G199200 Sobic005G199200 Sobic004G128200--Sobic005G199200 Sobic001G367100 Sobic001G367100 Sobic004G128200--Sobic001G367100 Sobic010G279900 Sobic010G279900 Sobic004G128200--Sobic010G279900 Sobic001G315400 Sobic001G315400 Sobic004G128200--Sobic001G315400 Sobic003G409200 Sobic003G409200 Sobic004G128200--Sobic003G409200 Sobic001G090300 Sobic001G090300 Sobic004G128200--Sobic001G090300 Sobic002G145800 Sobic002G145800 Sobic004G128200--Sobic002G145800 Sobic007G183300 Sobic007G183300 Sobic004G128200--Sobic007G183300 Sobic008G017100 Sobic008G017100 Sobic004G128200--Sobic008G017100 Sobic005G199200--Sobic001G090300 Sobic003G184400 Sobic003G184400 Sobic005G199200--Sobic003G184400 Sobic005G199200--Sobic004G128200 Sobic001G334100 Sobic001G334100 Sobic005G199200--Sobic001G334100 Sobic009G104900 Sobic009G104900 Sobic005G199200--Sobic009G104900 Sobic001G373000 Sobic001G373000 Sobic005G199200--Sobic001G373000 Sobic010G278600 Sobic010G278600 Sobic005G199200--Sobic010G278600 Sobic002G142600 Sobic002G142600 Sobic005G199200--Sobic002G142600 Sobic003G246000 Sobic003G246000 Sobic005G199200--Sobic003G246000 Sobic001G367100--Sobic010G279900 Sobic001G367100--Sobic001G315400 Sobic001G245900 Sobic001G245900 Sobic001G367100--Sobic001G245900 Sobic003G023400 Sobic003G023400 Sobic001G367100--Sobic003G023400 Sobic008G080500 Sobic008G080500 Sobic001G367100--Sobic008G080500 Sobic009G151200 Sobic009G151200 Sobic001G367100--Sobic009G151200 Sobic001G367100--Sobic004G128200 Sobic002G079100 Sobic002G079100 Sobic001G367100--Sobic002G079100 Sobic003G077500 Sobic003G077500 Sobic001G367100--Sobic003G077500 Sobic004G156500 Sobic004G156500 Sobic010G279900--Sobic004G156500 Sobic010G279900--Sobic007G183300 Sobic004G086200 Sobic004G086200 Sobic010G279900--Sobic004G086200 Sobic010G279900--Sobic001G367100 Sobic007G027700 Sobic007G027700 Sobic010G279900--Sobic007G027700 Sobic010G279900--Sobic003G409200 Sobic003G253400 Sobic003G253400 Sobic010G279900--Sobic003G253400 Sobic003G416700 Sobic003G416700 Sobic010G279900--Sobic003G416700 Sobic008G100100 Sobic008G100100 Sobic010G279900--Sobic008G100100 Sobic001G315400--Sobic001G367100 Sobic001G315400--Sobic003G077500 Sobic001G315400--Sobic002G079100 Sobic002G002100 Sobic002G002100 Sobic001G315400--Sobic002G002100 Sobic005G047300 Sobic005G047300 Sobic001G315400--Sobic005G047300 Sobic002G223300 Sobic002G223300 Sobic001G315400--Sobic002G223300 Sobic001G315400--Sobic004G128200 Sobic004G227500 Sobic004G227500 Sobic001G315400--Sobic004G227500 Sobic001G395200 Sobic001G395200 Sobic001G315400--Sobic001G395200 Sobic001G346900 Sobic001G346900 Sobic003G409200--Sobic001G346900 Sobic010G215900 Sobic010G215900 Sobic003G409200--Sobic010G215900 Sobic004G111000 Sobic004G111000 Sobic003G409200--Sobic004G111000 Sobic008G057000 Sobic008G057000 Sobic003G409200--Sobic008G057000 Sobic003G427100 Sobic003G427100 Sobic003G409200--Sobic003G427100 Sobic001G501800 Sobic001G501800 Sobic003G409200--Sobic001G501800 Sobic004G285000 Sobic004G285000 Sobic003G409200--Sobic004G285000 Sobic003G409200--Sobic010G279900 Sobic003G409200--Sobic002G145800 Sobic001G090300--Sobic005G199200 Sobic009G113100 Sobic009G113100 Sobic001G090300--Sobic009G113100 Sobic005G040900 Sobic005G040900 Sobic001G090300--Sobic005G040900 Sobic003G415100 Sobic003G415100 Sobic001G090300--Sobic003G415100 Sobic009G074700 Sobic009G074700 Sobic001G090300--Sobic009G074700 Sobic007G187600 Sobic007G187600 Sobic001G090300--Sobic007G187600 Sobic009G129600 Sobic009G129600 Sobic001G090300--Sobic009G129600 Sobic009G000400 Sobic009G000400 Sobic001G090300--Sobic009G000400 Sobic001G090300--Sobic001G334100 Sobic006G269800 Sobic006G269800 Sobic002G145800--Sobic006G269800 Sobic002G145800--Sobic003G416700 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic001G051700 Sobic001G051700 Sobic002G145800--Sobic001G051700 Sobic003G062300 Sobic003G062300 Sobic002G145800--Sobic003G062300 Sobic008G147200 Sobic008G147200 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600 Sobic005G200800 Sobic005G200800 Sobic007G183300--Sobic005G200800 Sobic007G183300--Sobic002G145800 Sobic007G183300--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic007G183300--Sobic003G214600 Sobic007G183300--Sobic010G279900 Sobic002G154000 Sobic002G154000 Sobic007G183300--Sobic002G154000 Sobic005G220000 Sobic005G220000 Sobic007G183300--Sobic005G220000 Sobic007G168300 Sobic007G168300 Sobic007G183300--Sobic007G168300 Sobic007G183300--Sobic001G051700 Sobic004G119400 Sobic004G119400 Sobic008G017100--Sobic004G119400 Sobic008G017100--Sobic006G269800 Sobic010G224700 Sobic010G224700 Sobic008G017100--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic008G017100--Sobic006G185200 Sobic008G017100--Sobic002G079100 Sobic002G378100 Sobic002G378100 Sobic008G017100--Sobic002G378100 Sobic004G351800 Sobic004G351800 Sobic008G017100--Sobic004G351800 Sobic007G171100 Sobic007G171100 Sobic008G017100--Sobic007G171100 Sobic008G017100--Sobic008G147200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.