Gene annotation
Transcriptome id Sobic.004G178400.1
Synonym Sb04g022820
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XUU4
Pfam PF13639
Panther DB PTHR22765 PTHR22765:SF29
NCBI CDD -
KEGG Orthology K19039; E3 ubiquitin-protein ligase ATL7/58/59
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G10150 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g35144.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020691
Brachypodium KQJ99897
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G178400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G140600 HEAT repeat family protein, putative, expressed K16578: CLIP-associating protein 1/2
2 Sobic.004G128200 Probable LRR receptor-like serine/threonine-protein kinase At5g10290(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
3 Sobic.008G125100 Mur ligase family protein, putative, expressed -
4 Sobic.003G077500 expressed protein -
5 Sobic.008G088842 - -
6 Sobic.002G143200 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
7 Sobic.003G023400 SCAR-like protein 2, putative, expressed -
8 Sobic.001G253200 mandelonitrile lyase, putative, expressed -
9 Sobic.008G190500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
10 Sobic.001G540800 DNA binding protein, putative, expressed -
11 Sobic.001G315400 expressed protein -
12 Sobic.002G233900 AGAP005770-PA, putative, expressed -
13 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
14 Sobic.002G033700 AIR9 protein, putative, expressed -
15 Sobic.001G078100 expressed protein -
16 Sobic.007G054400 FAR1 family protein, expressed -
17 Sobic.003G412300 expressed protein -
18 Sobic.001G036800 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
19 Sobic.001G428000 uncharacterized TPR repeat-containing protein, putative, expressed -
20 Sobic.001G371700 zinc finger protein, putative, expressed -


Gene co-expression network
sample Sobic004G178400 Sobic004G178400 Sobic006G140600 Sobic006G140600 Sobic004G178400--Sobic006G140600 Sobic004G128200 Sobic004G128200 Sobic004G178400--Sobic004G128200 Sobic008G125100 Sobic008G125100 Sobic004G178400--Sobic008G125100 Sobic003G077500 Sobic003G077500 Sobic004G178400--Sobic003G077500 Sobic008G088842 Sobic008G088842 Sobic004G178400--Sobic008G088842 Sobic002G143200 Sobic002G143200 Sobic004G178400--Sobic002G143200 Sobic003G023400 Sobic003G023400 Sobic004G178400--Sobic003G023400 Sobic001G253200 Sobic001G253200 Sobic004G178400--Sobic001G253200 Sobic008G190500 Sobic008G190500 Sobic004G178400--Sobic008G190500 Sobic006G140600--Sobic008G088842 Sobic006G140600--Sobic002G143200 Sobic001G385400 Sobic001G385400 Sobic006G140600--Sobic001G385400 Sobic010G138900 Sobic010G138900 Sobic006G140600--Sobic010G138900 Sobic006G208400 Sobic006G208400 Sobic006G140600--Sobic006G208400 Sobic001G315400 Sobic001G315400 Sobic006G140600--Sobic001G315400 Sobic003G435500 Sobic003G435500 Sobic006G140600--Sobic003G435500 Sobic006G140600--Sobic004G178400 Sobic006G033101 Sobic006G033101 Sobic006G140600--Sobic006G033101 Sobic005G199200 Sobic005G199200 Sobic004G128200--Sobic005G199200 Sobic001G367100 Sobic001G367100 Sobic004G128200--Sobic001G367100 Sobic010G279900 Sobic010G279900 Sobic004G128200--Sobic010G279900 Sobic004G128200--Sobic001G315400 Sobic003G409200 Sobic003G409200 Sobic004G128200--Sobic003G409200 Sobic001G090300 Sobic001G090300 Sobic004G128200--Sobic001G090300 Sobic002G145800 Sobic002G145800 Sobic004G128200--Sobic002G145800 Sobic007G183300 Sobic007G183300 Sobic004G128200--Sobic007G183300 Sobic008G017100 Sobic008G017100 Sobic004G128200--Sobic008G017100 Sobic009G122900 Sobic009G122900 Sobic008G125100--Sobic009G122900 Sobic008G125100--Sobic001G315400 Sobic007G000400 Sobic007G000400 Sobic008G125100--Sobic007G000400 Sobic008G125100--Sobic004G128200 Sobic001G236800 Sobic001G236800 Sobic008G125100--Sobic001G236800 Sobic003G304800 Sobic003G304800 Sobic008G125100--Sobic003G304800 Sobic007G172600 Sobic007G172600 Sobic008G125100--Sobic007G172600 Sobic008G125100--Sobic004G178400 Sobic002G380100 Sobic002G380100 Sobic008G125100--Sobic002G380100 Sobic003G077500--Sobic001G315400 Sobic007G125700 Sobic007G125700 Sobic003G077500--Sobic007G125700 Sobic001G372900 Sobic001G372900 Sobic003G077500--Sobic001G372900 Sobic002G334600 Sobic002G334600 Sobic003G077500--Sobic002G334600 Sobic002G219900 Sobic002G219900 Sobic003G077500--Sobic002G219900 Sobic006G254500 Sobic006G254500 Sobic003G077500--Sobic006G254500 Sobic003G077500--Sobic001G367100 Sobic004G315700 Sobic004G315700 Sobic003G077500--Sobic004G315700 Sobic009G031500 Sobic009G031500 Sobic003G077500--Sobic009G031500 Sobic008G088842--Sobic010G138900 Sobic008G088842--Sobic006G140600 Sobic008G088842--Sobic002G143200 Sobic010G262100 Sobic010G262100 Sobic008G088842--Sobic010G262100 Sobic003G311600 Sobic003G311600 Sobic008G088842--Sobic003G311600 Sobic001G451300 Sobic001G451300 Sobic008G088842--Sobic001G451300 Sobic006G280100 Sobic006G280100 Sobic008G088842--Sobic006G280100 Sobic008G088842--Sobic006G208400 Sobic002G340200 Sobic002G340200 Sobic008G088842--Sobic002G340200 Sobic002G143200--Sobic001G385400 Sobic002G143200--Sobic006G140600 Sobic002G143200--Sobic008G088842 Sobic002G098500 Sobic002G098500 Sobic002G143200--Sobic002G098500 Sobic008G015200 Sobic008G015200 Sobic002G143200--Sobic008G015200 Sobic002G143200--Sobic003G435500 Sobic002G143200--Sobic001G367100 Sobic004G341700 Sobic004G341700 Sobic002G143200--Sobic004G341700 Sobic008G192700 Sobic008G192700 Sobic002G143200--Sobic008G192700 Sobic004G193800 Sobic004G193800 Sobic003G023400--Sobic004G193800 Sobic002G049000 Sobic002G049000 Sobic003G023400--Sobic002G049000 Sobic006G210200 Sobic006G210200 Sobic003G023400--Sobic006G210200 Sobic003G185250 Sobic003G185250 Sobic003G023400--Sobic003G185250 Sobic002G090400 Sobic002G090400 Sobic003G023400--Sobic002G090400 Sobic008G068800 Sobic008G068800 Sobic003G023400--Sobic008G068800 Sobic003G023400--Sobic001G367100 Sobic001G094000 Sobic001G094000 Sobic003G023400--Sobic001G094000 Sobic003G163100 Sobic003G163100 Sobic003G023400--Sobic003G163100 Sobic007G054400 Sobic007G054400 Sobic001G253200--Sobic007G054400 Sobic005G079800 Sobic005G079800 Sobic001G253200--Sobic005G079800 Sobic004G039200 Sobic004G039200 Sobic001G253200--Sobic004G039200 Sobic001G433300 Sobic001G433300 Sobic001G253200--Sobic001G433300 Sobic003G101500 Sobic003G101500 Sobic001G253200--Sobic003G101500 Sobic002G151600 Sobic002G151600 Sobic001G253200--Sobic002G151600 Sobic002G309800 Sobic002G309800 Sobic001G253200--Sobic002G309800 Sobic003G197800 Sobic003G197800 Sobic001G253200--Sobic003G197800 Sobic008G100100 Sobic008G100100 Sobic001G253200--Sobic008G100100 Sobic007G210900 Sobic007G210900 Sobic008G190500--Sobic007G210900 Sobic008G086200 Sobic008G086200 Sobic008G190500--Sobic008G086200 Sobic010G135300 Sobic010G135300 Sobic008G190500--Sobic010G135300 Sobic008G190500--Sobic003G077500 Sobic001G021500 Sobic001G021500 Sobic008G190500--Sobic001G021500 Sobic008G190500--Sobic003G023400 Sobic009G123500 Sobic009G123500 Sobic008G190500--Sobic009G123500 Sobic003G420800 Sobic003G420800 Sobic008G190500--Sobic003G420800 Sobic008G190500--Sobic001G315400
Octagon: transcription factors


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