Gene annotation
Transcriptome id Sobic.006G140600.1
Synonym CLASP, ATCLASP
Functional annotation HEAT repeat family protein, putative, expressed
UniProt A0A1B6PLX8
Pfam PF02985 PF12348
Panther DB PTHR21567 PTHR21567:SF9
NCBI CDD -
KEGG Orthology K16578; CLIP-associating protein 1/2
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G20190 : CLIP-associated protein
RAP-DB (Rice) LOC_Os04g42840.1 : HEAT repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022880 , Zm00025a035958 , Zm00025a010742 , Zm00025a056451
Brachypodium KQJ83476 , KQJ83477 , PNT69074 , KQK00355
Barley HORVU2Hr1G087810.10 , HORVU2Hr1G087810.11 , HORVU2Hr1G087810.12 , HORVU2Hr1G087810.13 , HORVU2Hr1G087810.14 , HORVU2Hr1G087810.15 , HORVU2Hr1G087810.8 , HORVU2Hr1G087810.9 , HORVU2Hr1G087810.2 , HORVU2Hr1G087810.3 , HORVU2Hr1G087810.1 , HORVU2Hr1G087810.6 , HORVU2Hr1G087810.7 , HORVU2Hr1G087810.4 , HORVU2Hr1G087810.5 , HORVU6Hr1G057550.8 , HORVU6Hr1G057550.9 , HORVU6Hr1G057550.2 , HORVU6Hr1G057550.3 , HORVU6Hr1G057550.6 , HORVU6Hr1G057550.7 , HORVU6Hr1G057550.4 , HORVU6Hr1G057550.5 , HORVU6Hr1G057550.10 , HORVU6Hr1G057550.11 , HORVU6Hr1G057550.12 , HORVU6Hr1G057550.13 , HORVU6Hr1G057550.14
Wheat TraesCS6A02G228500 , TraesCS6A02G228500 , TraesCS6A02G228500 , TraesCS6A02G228500 , TraesCS6A02G228500 , TraesCS6A02G228500 , TraesCS6B02G253200 , TraesCS6B02G253200 , TraesCS6B02G253200 , TraesCS2B02G380500 , TraesCS2B02G380500 , TraesCS2B02G380500 , TraesCS2A02G362600 , TraesCS2A02G362600 , TraesCS2A02G362600 , TraesCSU02G084300 , TraesCSU02G084300 , TraesCSU02G084300 , TraesCS2D02G360000 , TraesCS2D02G360000 , TraesCS6D02G206600 , TraesCS6D02G206600 , TraesCS6D02G206600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G088842 - -
2 Sobic.002G143200 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
3 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
4 Sobic.010G138900 cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed K11991: tRNA(adenine34) deaminase
5 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
6 Sobic.001G315400 expressed protein -
7 Sobic.003G435500 expressed protein -
8 Sobic.004G178400 zinc finger, C3HC4 type domain containing protein, expressed K19039: E3 ubiquitin-protein ligase ATL7/58/59
9 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
10 Sobic.004G128200 Probable LRR receptor-like serine/threonine-protein kinase At5g10290(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
11 Sobic.009G104900 - K03348: anaphase-promoting complex subunit 1
12 Sobic.002G427300 protein phosphotase protein, putative, expressed -
13 Sobic.003G077500 expressed protein -
14 Sobic.009G167100 TBC domain containing protein, expressed -
15 Sobic.001G367100 pleckstrin homology domain-containing protein, putative, expressed -
16 Sobic.008G015200 NAP1, putative, expressed K05750: NCKAP1, NCK-associated protein 1
17 Sobic.007G047600 expressed protein -
18 Sobic.010G099800 growth regulator related protein, putative, expressed -
19 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
20 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4


Gene co-expression network
sample Sobic006G140600 Sobic006G140600 Sobic008G088842 Sobic008G088842 Sobic006G140600--Sobic008G088842 Sobic002G143200 Sobic002G143200 Sobic006G140600--Sobic002G143200 Sobic001G385400 Sobic001G385400 Sobic006G140600--Sobic001G385400 Sobic010G138900 Sobic010G138900 Sobic006G140600--Sobic010G138900 Sobic006G208400 Sobic006G208400 Sobic006G140600--Sobic006G208400 Sobic001G315400 Sobic001G315400 Sobic006G140600--Sobic001G315400 Sobic003G435500 Sobic003G435500 Sobic006G140600--Sobic003G435500 Sobic004G178400 Sobic004G178400 Sobic006G140600--Sobic004G178400 Sobic006G033101 Sobic006G033101 Sobic006G140600--Sobic006G033101 Sobic008G088842--Sobic010G138900 Sobic008G088842--Sobic006G140600 Sobic008G088842--Sobic002G143200 Sobic010G262100 Sobic010G262100 Sobic008G088842--Sobic010G262100 Sobic003G311600 Sobic003G311600 Sobic008G088842--Sobic003G311600 Sobic001G451300 Sobic001G451300 Sobic008G088842--Sobic001G451300 Sobic006G280100 Sobic006G280100 Sobic008G088842--Sobic006G280100 Sobic008G088842--Sobic006G208400 Sobic002G340200 Sobic002G340200 Sobic008G088842--Sobic002G340200 Sobic002G143200--Sobic001G385400 Sobic002G143200--Sobic006G140600 Sobic002G143200--Sobic008G088842 Sobic002G098500 Sobic002G098500 Sobic002G143200--Sobic002G098500 Sobic008G015200 Sobic008G015200 Sobic002G143200--Sobic008G015200 Sobic002G143200--Sobic003G435500 Sobic001G367100 Sobic001G367100 Sobic002G143200--Sobic001G367100 Sobic004G341700 Sobic004G341700 Sobic002G143200--Sobic004G341700 Sobic008G192700 Sobic008G192700 Sobic002G143200--Sobic008G192700 Sobic001G143600 Sobic001G143600 Sobic001G385400--Sobic001G143600 Sobic001G385400--Sobic002G143200 Sobic001G385400--Sobic003G435500 Sobic001G385400--Sobic008G015200 Sobic010G250800 Sobic010G250800 Sobic001G385400--Sobic010G250800 Sobic001G507200 Sobic001G507200 Sobic001G385400--Sobic001G507200 Sobic002G002100 Sobic002G002100 Sobic001G385400--Sobic002G002100 Sobic009G167100 Sobic009G167100 Sobic001G385400--Sobic009G167100 Sobic001G385400--Sobic006G140600 Sobic010G138900--Sobic008G088842 Sobic010G138900--Sobic010G262100 Sobic010G138900--Sobic001G451300 Sobic009G142000 Sobic009G142000 Sobic010G138900--Sobic009G142000 Sobic001G453000 Sobic001G453000 Sobic010G138900--Sobic001G453000 Sobic010G138900--Sobic003G435500 Sobic003G250900 Sobic003G250900 Sobic010G138900--Sobic003G250900 Sobic004G034700 Sobic004G034700 Sobic010G138900--Sobic004G034700 Sobic002G043100 Sobic002G043100 Sobic010G138900--Sobic002G043100 Sobic004G354000 Sobic004G354000 Sobic006G208400--Sobic004G354000 Sobic010G236600 Sobic010G236600 Sobic006G208400--Sobic010G236600 Sobic008G017100 Sobic008G017100 Sobic006G208400--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic006G208400--Sobic010G224700 Sobic001G408300 Sobic001G408300 Sobic006G208400--Sobic001G408300 Sobic001G460500 Sobic001G460500 Sobic006G208400--Sobic001G460500 Sobic002G423400 Sobic002G423400 Sobic006G208400--Sobic002G423400 Sobic002G427300 Sobic002G427300 Sobic006G208400--Sobic002G427300 Sobic003G314700 Sobic003G314700 Sobic006G208400--Sobic003G314700 Sobic001G315400--Sobic001G367100 Sobic003G077500 Sobic003G077500 Sobic001G315400--Sobic003G077500 Sobic002G079100 Sobic002G079100 Sobic001G315400--Sobic002G079100 Sobic001G315400--Sobic002G002100 Sobic005G047300 Sobic005G047300 Sobic001G315400--Sobic005G047300 Sobic002G223300 Sobic002G223300 Sobic001G315400--Sobic002G223300 Sobic004G128200 Sobic004G128200 Sobic001G315400--Sobic004G128200 Sobic004G227500 Sobic004G227500 Sobic001G315400--Sobic004G227500 Sobic001G395200 Sobic001G395200 Sobic001G315400--Sobic001G395200 Sobic003G435500--Sobic001G385400 Sobic003G435500--Sobic010G138900 Sobic003G435500--Sobic001G143600 Sobic002G127400 Sobic002G127400 Sobic003G435500--Sobic002G127400 Sobic006G173200 Sobic006G173200 Sobic003G435500--Sobic006G173200 Sobic003G144300 Sobic003G144300 Sobic003G435500--Sobic003G144300 Sobic003G435500--Sobic010G262100 Sobic004G038100 Sobic004G038100 Sobic003G435500--Sobic004G038100 Sobic003G435500--Sobic002G143200 Sobic004G178400--Sobic006G140600 Sobic004G178400--Sobic004G128200 Sobic008G125100 Sobic008G125100 Sobic004G178400--Sobic008G125100 Sobic004G178400--Sobic003G077500 Sobic004G178400--Sobic008G088842 Sobic004G178400--Sobic002G143200 Sobic003G023400 Sobic003G023400 Sobic004G178400--Sobic003G023400 Sobic001G253200 Sobic001G253200 Sobic004G178400--Sobic001G253200 Sobic008G190500 Sobic008G190500 Sobic004G178400--Sobic008G190500 Sobic006G033101--Sobic004G038100 Sobic009G104900 Sobic009G104900 Sobic006G033101--Sobic009G104900 Sobic001G373800 Sobic001G373800 Sobic006G033101--Sobic001G373800 Sobic006G181800 Sobic006G181800 Sobic006G033101--Sobic006G181800 Sobic002G371600 Sobic002G371600 Sobic006G033101--Sobic002G371600 Sobic001G373000 Sobic001G373000 Sobic006G033101--Sobic001G373000 Sobic002G126800 Sobic002G126800 Sobic006G033101--Sobic002G126800 Sobic002G430300 Sobic002G430300 Sobic006G033101--Sobic002G430300 Sobic006G033101--Sobic006G280100
Octagon: transcription factors


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