Gene annotation
Transcriptome id Sobic.009G167100.1
Synonym Sb09g022880
Functional annotation TBC domain containing protein, expressed
UniProt C5YZC7
Pfam PF00566
Panther DB PTHR22957 PTHR22957:SF328
NCBI CDD KOG2058; Ypt/Rab GTPase activating protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G55020 : Ypt/Rab-GAP domain of gyp1p superfamily protein
RAP-DB (Rice) LOC_Os05g38950.2 : TBC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026967 , Zm00025a037728 , Zm00025a043925 , Zm00025a012460
Brachypodium KQK05840 , KQK10463 , KQK05839 , KQK05838
Barley HORVU3Hr1G087250.9 , HORVU3Hr1G087250.8 , HORVU3Hr1G087250.4 , HORVU3Hr1G087250.7 , HORVU3Hr1G087250.1 , HORVU3Hr1G087250.3 , HORVU3Hr1G087250.2 , HORVU3Hr1G087250.13 , HORVU3Hr1G087250.12 , HORVU3Hr1G087250.15 , HORVU1Hr1G071360.10 , HORVU1Hr1G071360.11 , HORVU3Hr1G087250.18 , HORVU3Hr1G087250.11 , HORVU3Hr1G087250.10 , HORVU3Hr1G087250.14 , HORVU3Hr1G087250.17 , HORVU3Hr1G087250.16 , HORVU1Hr1G071360.2 , HORVU1Hr1G071360.8 , HORVU1Hr1G071360.9 , HORVU1Hr1G071360.6 , HORVU1Hr1G071360.7 , HORVU1Hr1G071360.4 , HORVU1Hr1G071360.5 , HORVU1Hr1G071360.3
Wheat TraesCS3A02G353700 , TraesCS3A02G353700 , TraesCS3A02G353700 , TraesCS3D02G347700 , TraesCS3D02G347700 , TraesCS3D02G347700 , TraesCS1D02G289200 , TraesCS1D02G289200 , TraesCS1D02G289200 , TraesCS1D02G289200 , TraesCS1A02G290500 , TraesCS1A02G290500 , TraesCS1B02G299800 , TraesCS1B02G299800 , TraesCS1B02G299800 , TraesCS3B02G386400 , TraesCS3B02G386400 , TraesCS3B02G386400 , TraesCS3B02G386400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G250800 DNA binding protein, putative, expressed -
2 Sobic.009G061000 DNA binding protein, putative, expressed -
3 Sobic.006G257200 kinesin motor domain containing protein, putative, expressed -
4 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
5 Sobic.008G015200 NAP1, putative, expressed K05750: NCKAP1, NCK-associated protein 1
6 Sobic.002G320600 HEAT repeat family protein, putative, expressed -
7 Sobic.003G027800 protein kinase family protein, putative, expressed -
8 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
9 Sobic.008G192700 ATMAP70 protein, putative, expressed -
10 Sobic.006G071628 - -
11 Sobic.001G159800 KIP1, putative, expressed -
12 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
13 Sobic.002G293700 ATXR, putative, expressed -
14 Sobic.001G437500 plant protein of unknown function DUF869 domain containing protein, expressed -
15 Sobic.005G064100 expressed protein -
16 Sobic.006G254500 IQ calmodulin-binding motif family protein, putative, expressed -
17 Sobic.005G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase APK1B, chloroplast precursor, putative, expressed -
18 Sobic.002G370400 expressed protein -
19 Sobic.003G435500 expressed protein -
20 Sobic.001G425700 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic009G167100 Sobic009G167100 Sobic010G250800 Sobic010G250800 Sobic009G167100--Sobic010G250800 Sobic009G061000 Sobic009G061000 Sobic009G167100--Sobic009G061000 Sobic006G257200 Sobic006G257200 Sobic009G167100--Sobic006G257200 Sobic001G385400 Sobic001G385400 Sobic009G167100--Sobic001G385400 Sobic008G015200 Sobic008G015200 Sobic009G167100--Sobic008G015200 Sobic002G320600 Sobic002G320600 Sobic009G167100--Sobic002G320600 Sobic003G027800 Sobic003G027800 Sobic009G167100--Sobic003G027800 Sobic009G052100 Sobic009G052100 Sobic009G167100--Sobic009G052100 Sobic008G192700 Sobic008G192700 Sobic009G167100--Sobic008G192700 Sobic010G250800--Sobic009G052100 Sobic007G006800 Sobic007G006800 Sobic010G250800--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic010G250800--Sobic006G071628 Sobic001G408300 Sobic001G408300 Sobic010G250800--Sobic001G408300 Sobic010G250800--Sobic001G385400 Sobic010G250800--Sobic009G167100 Sobic005G088900 Sobic005G088900 Sobic010G250800--Sobic005G088900 Sobic009G049200 Sobic009G049200 Sobic010G250800--Sobic009G049200 Sobic004G038100 Sobic004G038100 Sobic010G250800--Sobic004G038100 Sobic006G267500 Sobic006G267500 Sobic009G061000--Sobic006G267500 Sobic009G073400 Sobic009G073400 Sobic009G061000--Sobic009G073400 Sobic001G437500 Sobic001G437500 Sobic009G061000--Sobic001G437500 Sobic002G276600 Sobic002G276600 Sobic009G061000--Sobic002G276600 Sobic001G159800 Sobic001G159800 Sobic009G061000--Sobic001G159800 Sobic010G090500 Sobic010G090500 Sobic009G061000--Sobic010G090500 Sobic009G206500 Sobic009G206500 Sobic009G061000--Sobic009G206500 Sobic009G061000--Sobic009G167100 Sobic001G051300 Sobic001G051300 Sobic009G061000--Sobic001G051300 Sobic002G142500 Sobic002G142500 Sobic006G257200--Sobic002G142500 Sobic006G241800 Sobic006G241800 Sobic006G257200--Sobic006G241800 Sobic002G362700 Sobic002G362700 Sobic006G257200--Sobic002G362700 Sobic002G293700 Sobic002G293700 Sobic006G257200--Sobic002G293700 Sobic003G078300 Sobic003G078300 Sobic006G257200--Sobic003G078300 Sobic001G425700 Sobic001G425700 Sobic006G257200--Sobic001G425700 Sobic002G001100 Sobic002G001100 Sobic006G257200--Sobic002G001100 Sobic004G164700 Sobic004G164700 Sobic006G257200--Sobic004G164700 Sobic010G135300 Sobic010G135300 Sobic006G257200--Sobic010G135300 Sobic001G143600 Sobic001G143600 Sobic001G385400--Sobic001G143600 Sobic002G143200 Sobic002G143200 Sobic001G385400--Sobic002G143200 Sobic003G435500 Sobic003G435500 Sobic001G385400--Sobic003G435500 Sobic001G385400--Sobic008G015200 Sobic001G385400--Sobic010G250800 Sobic001G507200 Sobic001G507200 Sobic001G385400--Sobic001G507200 Sobic002G002100 Sobic002G002100 Sobic001G385400--Sobic002G002100 Sobic001G385400--Sobic009G167100 Sobic006G140600 Sobic006G140600 Sobic001G385400--Sobic006G140600 Sobic008G015200--Sobic001G385400 Sobic008G015200--Sobic008G192700 Sobic002G374400 Sobic002G374400 Sobic008G015200--Sobic002G374400 Sobic002G074000 Sobic002G074000 Sobic008G015200--Sobic002G074000 Sobic008G015200--Sobic009G052100 Sobic008G015200--Sobic009G167100 Sobic006G179300 Sobic006G179300 Sobic008G015200--Sobic006G179300 Sobic008G015200--Sobic002G143200 Sobic008G015200--Sobic009G049200 Sobic003G031700 Sobic003G031700 Sobic002G320600--Sobic003G031700 Sobic001G201000 Sobic001G201000 Sobic002G320600--Sobic001G201000 Sobic003G420300 Sobic003G420300 Sobic002G320600--Sobic003G420300 Sobic003G292700 Sobic003G292700 Sobic002G320600--Sobic003G292700 Sobic010G211800 Sobic010G211800 Sobic002G320600--Sobic010G211800 Sobic002G320600--Sobic002G362700 Sobic003G226700 Sobic003G226700 Sobic002G320600--Sobic003G226700 Sobic008G127550 Sobic008G127550 Sobic002G320600--Sobic008G127550 Sobic004G328300 Sobic004G328300 Sobic002G320600--Sobic004G328300 Sobic002G219900 Sobic002G219900 Sobic003G027800--Sobic002G219900 Sobic008G169400 Sobic008G169400 Sobic003G027800--Sobic008G169400 Sobic007G128100 Sobic007G128100 Sobic003G027800--Sobic007G128100 Sobic008G038200 Sobic008G038200 Sobic003G027800--Sobic008G038200 Sobic005G032600 Sobic005G032600 Sobic003G027800--Sobic005G032600 Sobic003G027800--Sobic009G167100 Sobic009G031500 Sobic009G031500 Sobic003G027800--Sobic009G031500 Sobic001G113800 Sobic001G113800 Sobic003G027800--Sobic001G113800 Sobic003G027800--Sobic006G179300 Sobic004G315700 Sobic004G315700 Sobic009G052100--Sobic004G315700 Sobic004G156200 Sobic004G156200 Sobic009G052100--Sobic004G156200 Sobic009G052100--Sobic001G507200 Sobic009G052100--Sobic009G049200 Sobic009G052100--Sobic006G071628 Sobic009G052100--Sobic010G250800 Sobic003G315700 Sobic003G315700 Sobic009G052100--Sobic003G315700 Sobic010G252700 Sobic010G252700 Sobic009G052100--Sobic010G252700 Sobic009G052100--Sobic003G420300 Sobic001G285200 Sobic001G285200 Sobic008G192700--Sobic001G285200 Sobic008G192700--Sobic008G015200 Sobic010G049300 Sobic010G049300 Sobic008G192700--Sobic010G049300 Sobic008G192700--Sobic002G074000 Sobic008G148500 Sobic008G148500 Sobic008G192700--Sobic008G148500 Sobic006G272500 Sobic006G272500 Sobic008G192700--Sobic006G272500 Sobic002G419200 Sobic002G419200 Sobic008G192700--Sobic002G419200 Sobic008G192700--Sobic001G507200 Sobic001G026800 Sobic001G026800 Sobic008G192700--Sobic001G026800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.