Gene annotation
Transcriptome id Sobic.001G385400.1
Synonym SPK1
Functional annotation guanine nucleotide exchange factor, putative, expressed
UniProt A0A1B6QNI5
Pfam PF06920 PF14429
Panther DB PTHR23317:SF76 PTHR23317
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005085; guanyl-nucleotide exchange factor activity GO:0007264small GTPase mediated signal transduction


Orthologs (automatic annotation)
TAIR AT4G16340 : guanyl-nucleotide exchange factors;GTPase binding;GTP binding
RAP-DB (Rice) LOC_Os03g21080.1 : guanine nucleotide exchange factor, putative, expressed
MaizeGDB (Corn) Zm00025a002289 , Zm00025a048806 , Zm00025a052455
Brachypodium KQJ97502 , PNT67744 , KQJ85009
Barley HORVU4Hr1G051250.1 , HORVU4Hr1G051250.3 , HORVU4Hr1G051250.2 , HORVU4Hr1G051250.5 , HORVU4Hr1G051250.4 , HORVU4Hr1G051250.7 , HORVU4Hr1G051250.6 , HORVU4Hr1G051250.9 , HORVU4Hr1G051250.8 , HORVU4Hr1G051250.15 , HORVU4Hr1G051250.14 , HORVU4Hr1G051250.17 , HORVU4Hr1G051250.16 , HORVU4Hr1G051250.11 , HORVU4Hr1G051250.10 , HORVU4Hr1G051250.13 , HORVU4Hr1G051250.12
Wheat TraesCS4A02G131100 , TraesCS4D02G175600 , TraesCS4D02G175600 , TraesCS4D02G175600 , TraesCS4D02G175600 , TraesCS4B02G173500 , TraesCS4B02G173500 , TraesCS4B02G173500 , TraesCS4B02G173500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G143600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
2 Sobic.002G143200 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
3 Sobic.003G435500 expressed protein -
4 Sobic.008G015200 NAP1, putative, expressed K05750: NCKAP1, NCK-associated protein 1
5 Sobic.010G250800 DNA binding protein, putative, expressed -
6 Sobic.001G507200 PIR, putative, expressed K05749: cytoplasmic FMR1 interacting protein
7 Sobic.002G002100 expressed protein -
8 Sobic.009G167100 TBC domain containing protein, expressed -
9 Sobic.006G140600 HEAT repeat family protein, putative, expressed K16578: CLIP-associating protein 1/2
10 Sobic.008G192700 ATMAP70 protein, putative, expressed -
11 Sobic.005G021900 expressed protein -
12 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
13 Sobic.003G077500 expressed protein -
14 Sobic.001G367100 pleckstrin homology domain-containing protein, putative, expressed -
15 Sobic.004G341700 transcriptional corepressor LEUNIG, putative, expressed -
16 Sobic.006G173200 beige/BEACH domain containing protein, expressed -
17 Sobic.001G315400 expressed protein -
18 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
19 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
20 Sobic.006G179300 OsFBX64 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic001G385400 Sobic001G385400 Sobic001G143600 Sobic001G143600 Sobic001G385400--Sobic001G143600 Sobic002G143200 Sobic002G143200 Sobic001G385400--Sobic002G143200 Sobic003G435500 Sobic003G435500 Sobic001G385400--Sobic003G435500 Sobic008G015200 Sobic008G015200 Sobic001G385400--Sobic008G015200 Sobic010G250800 Sobic010G250800 Sobic001G385400--Sobic010G250800 Sobic001G507200 Sobic001G507200 Sobic001G385400--Sobic001G507200 Sobic002G002100 Sobic002G002100 Sobic001G385400--Sobic002G002100 Sobic009G167100 Sobic009G167100 Sobic001G385400--Sobic009G167100 Sobic006G140600 Sobic006G140600 Sobic001G385400--Sobic006G140600 Sobic001G143600--Sobic001G385400 Sobic009G049200 Sobic009G049200 Sobic001G143600--Sobic009G049200 Sobic002G219900 Sobic002G219900 Sobic001G143600--Sobic002G219900 Sobic003G250900 Sobic003G250900 Sobic001G143600--Sobic003G250900 Sobic001G143600--Sobic003G435500 Sobic006G242500 Sobic006G242500 Sobic001G143600--Sobic006G242500 Sobic010G065800 Sobic010G065800 Sobic001G143600--Sobic010G065800 Sobic006G236000 Sobic006G236000 Sobic001G143600--Sobic006G236000 Sobic001G143600--Sobic001G507200 Sobic002G143200--Sobic001G385400 Sobic002G143200--Sobic006G140600 Sobic008G088842 Sobic008G088842 Sobic002G143200--Sobic008G088842 Sobic002G098500 Sobic002G098500 Sobic002G143200--Sobic002G098500 Sobic002G143200--Sobic008G015200 Sobic002G143200--Sobic003G435500 Sobic001G367100 Sobic001G367100 Sobic002G143200--Sobic001G367100 Sobic004G341700 Sobic004G341700 Sobic002G143200--Sobic004G341700 Sobic008G192700 Sobic008G192700 Sobic002G143200--Sobic008G192700 Sobic003G435500--Sobic001G385400 Sobic010G138900 Sobic010G138900 Sobic003G435500--Sobic010G138900 Sobic003G435500--Sobic001G143600 Sobic002G127400 Sobic002G127400 Sobic003G435500--Sobic002G127400 Sobic006G173200 Sobic006G173200 Sobic003G435500--Sobic006G173200 Sobic003G144300 Sobic003G144300 Sobic003G435500--Sobic003G144300 Sobic010G262100 Sobic010G262100 Sobic003G435500--Sobic010G262100 Sobic004G038100 Sobic004G038100 Sobic003G435500--Sobic004G038100 Sobic003G435500--Sobic002G143200 Sobic008G015200--Sobic001G385400 Sobic008G015200--Sobic008G192700 Sobic002G374400 Sobic002G374400 Sobic008G015200--Sobic002G374400 Sobic002G074000 Sobic002G074000 Sobic008G015200--Sobic002G074000 Sobic009G052100 Sobic009G052100 Sobic008G015200--Sobic009G052100 Sobic008G015200--Sobic009G167100 Sobic006G179300 Sobic006G179300 Sobic008G015200--Sobic006G179300 Sobic008G015200--Sobic002G143200 Sobic008G015200--Sobic009G049200 Sobic010G250800--Sobic009G052100 Sobic007G006800 Sobic007G006800 Sobic010G250800--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic010G250800--Sobic006G071628 Sobic001G408300 Sobic001G408300 Sobic010G250800--Sobic001G408300 Sobic010G250800--Sobic001G385400 Sobic010G250800--Sobic009G167100 Sobic005G088900 Sobic005G088900 Sobic010G250800--Sobic005G088900 Sobic010G250800--Sobic009G049200 Sobic010G250800--Sobic004G038100 Sobic001G507200--Sobic009G052100 Sobic001G507200--Sobic009G049200 Sobic001G507200--Sobic006G173200 Sobic004G315700 Sobic004G315700 Sobic001G507200--Sobic004G315700 Sobic001G507200--Sobic006G071628 Sobic001G296800 Sobic001G296800 Sobic001G507200--Sobic001G296800 Sobic001G507200--Sobic001G385400 Sobic001G507200--Sobic008G192700 Sobic002G399900 Sobic002G399900 Sobic001G507200--Sobic002G399900 Sobic001G113800 Sobic001G113800 Sobic002G002100--Sobic001G113800 Sobic002G002100--Sobic001G385400 Sobic005G204100 Sobic005G204100 Sobic002G002100--Sobic005G204100 Sobic001G315400 Sobic001G315400 Sobic002G002100--Sobic001G315400 Sobic007G210900 Sobic007G210900 Sobic002G002100--Sobic007G210900 Sobic002G002100--Sobic002G098500 Sobic002G216600 Sobic002G216600 Sobic002G002100--Sobic002G216600 Sobic006G167300 Sobic006G167300 Sobic002G002100--Sobic006G167300 Sobic002G002100--Sobic001G367100 Sobic009G167100--Sobic010G250800 Sobic009G061000 Sobic009G061000 Sobic009G167100--Sobic009G061000 Sobic006G257200 Sobic006G257200 Sobic009G167100--Sobic006G257200 Sobic009G167100--Sobic001G385400 Sobic009G167100--Sobic008G015200 Sobic002G320600 Sobic002G320600 Sobic009G167100--Sobic002G320600 Sobic003G027800 Sobic003G027800 Sobic009G167100--Sobic003G027800 Sobic009G167100--Sobic009G052100 Sobic009G167100--Sobic008G192700 Sobic006G140600--Sobic008G088842 Sobic006G140600--Sobic002G143200 Sobic006G140600--Sobic001G385400 Sobic006G140600--Sobic010G138900 Sobic006G208400 Sobic006G208400 Sobic006G140600--Sobic006G208400 Sobic006G140600--Sobic001G315400 Sobic006G140600--Sobic003G435500 Sobic004G178400 Sobic004G178400 Sobic006G140600--Sobic004G178400 Sobic006G033101 Sobic006G033101 Sobic006G140600--Sobic006G033101
Octagon: transcription factors


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