Gene annotation
Transcriptome id Sobic.001G367100.1,Sobic.001G367100.2
Synonym
Functional annotation pleckstrin homology domain-containing protein, putative, expressed
UniProt A0A1B6QN42 , A0A1B6QN40
Pfam PF00169 PF14389 PF00620
Panther DB PTHR23176 PTHR23176:SF44
NCBI CDD KOG4271; Rho-GTPase activating protein
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction


Orthologs (automatic annotation)
TAIR AT5G19390 : Rho GTPase activation protein (RhoGAP) with PH domain
RAP-DB (Rice) LOC_Os03g24180.1 : pleckstrin homology domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a057066 , Zm00025a050218 , Zm00025a015348 , Zm00025a002533 , Zm00025a049026 , Zm00025a008513
Brachypodium PNT77395 , KQK14864 , KQK21623 , KQK21624 , KQK21625
Barley HORVU4Hr1G042610.28 , HORVU4Hr1G042610.29 , HORVU4Hr1G042610.24 , HORVU4Hr1G042610.25 , HORVU4Hr1G042610.26 , HORVU4Hr1G042610.20 , HORVU4Hr1G042610.21 , HORVU4Hr1G042610.22 , HORVU4Hr1G042610.23 , HORVU2Hr1G023000.3 , HORVU4Hr1G042610.11 , HORVU4Hr1G042610.10 , HORVU4Hr1G042610.13 , HORVU4Hr1G042610.12 , HORVU4Hr1G042610.15 , HORVU4Hr1G042610.14 , HORVU4Hr1G042610.17 , HORVU4Hr1G042610.16 , HORVU4Hr1G042610.19 , HORVU4Hr1G042610.18 , HORVU2Hr1G023000.9 , HORVU2Hr1G023000.8 , HORVU2Hr1G023000.2 , HORVU2Hr1G023000.7 , HORVU2Hr1G023000.6 , HORVU2Hr1G023000.5 , HORVU2Hr1G023000.4 , HORVU4Hr1G042610.7 , HORVU4Hr1G042610.6 , HORVU4Hr1G042610.1 , HORVU4Hr1G042610.3 , HORVU4Hr1G042610.2 , HORVU4Hr1G042610.9 , HORVU4Hr1G042610.8 , HORVU4Hr1G042610.33 , HORVU4Hr1G042610.32 , HORVU4Hr1G042610.31 , HORVU4Hr1G042610.30 , HORVU2Hr1G023000.13 , HORVU2Hr1G023000.12 , HORVU2Hr1G023000.11 , HORVU2Hr1G023000.10
Wheat TraesCS4D02G163800 , TraesCS4A02G163400 , TraesCS2D02G133500 , TraesCS2B02G153800 , TraesCS2B02G153800 , TraesCS2B02G153800 , TraesCS2B02G153800 , TraesCS2B02G153800 , TraesCS2B02G153800 , TraesCS4A02G163400 , TraesCS4A02G163400 , TraesCS2A02G131400 , TraesCS2D02G133500 , TraesCS2D02G133500 , TraesCS2A02G131400 , TraesCS2D02G133500 , TraesCS2D02G133500 , TraesCS2A02G131400 , TraesCS2D02G133500 , TraesCS4A02G163400 , TraesCS2A02G131400 , TraesCS2A02G131400 , TraesCS2A02G131400 , TraesCS4B02G153200
Populus -


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cDNA sequences
Sobic.001G367100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G279900 PHD-finger domain containing protein, expressed -
2 Sobic.001G315400 expressed protein -
3 Sobic.001G245900 expressed protein -
4 Sobic.003G023400 SCAR-like protein 2, putative, expressed -
5 Sobic.008G080500 expressed protein -
6 Sobic.009G151200 expressed protein -
7 Sobic.004G128200 Probable LRR receptor-like serine/threonine-protein kinase At5g10290(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
8 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
9 Sobic.003G077500 expressed protein -
10 Sobic.004G156500 expressed protein -
11 Sobic.001G395200 cyclin-related protein, putative, expressed -
12 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
13 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
14 Sobic.001G384000 expressed protein -
15 Sobic.002G130900 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
16 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
17 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -
18 Sobic.004G111000 bromodomain containing protein, expressed -
19 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
20 Sobic.002G002100 expressed protein -


Gene co-expression network
sample Sobic001G367100 Sobic001G367100 Sobic010G279900 Sobic010G279900 Sobic001G367100--Sobic010G279900 Sobic001G315400 Sobic001G315400 Sobic001G367100--Sobic001G315400 Sobic001G245900 Sobic001G245900 Sobic001G367100--Sobic001G245900 Sobic003G023400 Sobic003G023400 Sobic001G367100--Sobic003G023400 Sobic008G080500 Sobic008G080500 Sobic001G367100--Sobic008G080500 Sobic009G151200 Sobic009G151200 Sobic001G367100--Sobic009G151200 Sobic004G128200 Sobic004G128200 Sobic001G367100--Sobic004G128200 Sobic002G079100 Sobic002G079100 Sobic001G367100--Sobic002G079100 Sobic003G077500 Sobic003G077500 Sobic001G367100--Sobic003G077500 Sobic004G156500 Sobic004G156500 Sobic010G279900--Sobic004G156500 Sobic007G183300 Sobic007G183300 Sobic010G279900--Sobic007G183300 Sobic004G086200 Sobic004G086200 Sobic010G279900--Sobic004G086200 Sobic010G279900--Sobic001G367100 Sobic007G027700 Sobic007G027700 Sobic010G279900--Sobic007G027700 Sobic003G409200 Sobic003G409200 Sobic010G279900--Sobic003G409200 Sobic003G253400 Sobic003G253400 Sobic010G279900--Sobic003G253400 Sobic003G416700 Sobic003G416700 Sobic010G279900--Sobic003G416700 Sobic008G100100 Sobic008G100100 Sobic010G279900--Sobic008G100100 Sobic001G315400--Sobic001G367100 Sobic001G315400--Sobic003G077500 Sobic001G315400--Sobic002G079100 Sobic002G002100 Sobic002G002100 Sobic001G315400--Sobic002G002100 Sobic005G047300 Sobic005G047300 Sobic001G315400--Sobic005G047300 Sobic002G223300 Sobic002G223300 Sobic001G315400--Sobic002G223300 Sobic001G315400--Sobic004G128200 Sobic004G227500 Sobic004G227500 Sobic001G315400--Sobic004G227500 Sobic001G395200 Sobic001G395200 Sobic001G315400--Sobic001G395200 Sobic001G245900--Sobic004G086200 Sobic001G245900--Sobic001G367100 Sobic001G245900--Sobic010G279900 Sobic001G346900 Sobic001G346900 Sobic001G245900--Sobic001G346900 Sobic008G057000 Sobic008G057000 Sobic001G245900--Sobic008G057000 Sobic001G245900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G245900--Sobic001G134300 Sobic001G088900 Sobic001G088900 Sobic001G245900--Sobic001G088900 Sobic006G138000 Sobic006G138000 Sobic001G245900--Sobic006G138000 Sobic004G193800 Sobic004G193800 Sobic003G023400--Sobic004G193800 Sobic002G049000 Sobic002G049000 Sobic003G023400--Sobic002G049000 Sobic006G210200 Sobic006G210200 Sobic003G023400--Sobic006G210200 Sobic003G185250 Sobic003G185250 Sobic003G023400--Sobic003G185250 Sobic002G090400 Sobic002G090400 Sobic003G023400--Sobic002G090400 Sobic008G068800 Sobic008G068800 Sobic003G023400--Sobic008G068800 Sobic003G023400--Sobic001G367100 Sobic001G094000 Sobic001G094000 Sobic003G023400--Sobic001G094000 Sobic003G163100 Sobic003G163100 Sobic003G023400--Sobic003G163100 Sobic007G159200 Sobic007G159200 Sobic008G080500--Sobic007G159200 Sobic010G262100 Sobic010G262100 Sobic008G080500--Sobic010G262100 Sobic004G355800 Sobic004G355800 Sobic008G080500--Sobic004G355800 Sobic006G112700 Sobic006G112700 Sobic008G080500--Sobic006G112700 Sobic008G080500--Sobic002G079100 Sobic005G200900 Sobic005G200900 Sobic008G080500--Sobic005G200900 Sobic010G269300 Sobic010G269300 Sobic008G080500--Sobic010G269300 Sobic003G299500 Sobic003G299500 Sobic008G080500--Sobic003G299500 Sobic002G235900 Sobic002G235900 Sobic008G080500--Sobic002G235900 Sobic006G248500 Sobic006G248500 Sobic009G151200--Sobic006G248500 Sobic002G259800 Sobic002G259800 Sobic009G151200--Sobic002G259800 Sobic005G133500 Sobic005G133500 Sobic009G151200--Sobic005G133500 Sobic004G285000 Sobic004G285000 Sobic009G151200--Sobic004G285000 Sobic001G424600 Sobic001G424600 Sobic009G151200--Sobic001G424600 Sobic004G085300 Sobic004G085300 Sobic009G151200--Sobic004G085300 Sobic009G151200--Sobic008G100100 Sobic009G151200--Sobic004G086200 Sobic009G151200--Sobic004G156500 Sobic005G199200 Sobic005G199200 Sobic004G128200--Sobic005G199200 Sobic004G128200--Sobic001G367100 Sobic004G128200--Sobic010G279900 Sobic004G128200--Sobic001G315400 Sobic004G128200--Sobic003G409200 Sobic001G090300 Sobic001G090300 Sobic004G128200--Sobic001G090300 Sobic002G145800 Sobic002G145800 Sobic004G128200--Sobic002G145800 Sobic004G128200--Sobic007G183300 Sobic008G017100 Sobic008G017100 Sobic004G128200--Sobic008G017100 Sobic003G124600 Sobic003G124600 Sobic002G079100--Sobic003G124600 Sobic001G448100 Sobic001G448100 Sobic002G079100--Sobic001G448100 Sobic002G079100--Sobic008G017100 Sobic002G079100--Sobic008G080500 Sobic002G380100 Sobic002G380100 Sobic002G079100--Sobic002G380100 Sobic002G292800 Sobic002G292800 Sobic002G079100--Sobic002G292800 Sobic010G278600 Sobic010G278600 Sobic002G079100--Sobic010G278600 Sobic006G245900 Sobic006G245900 Sobic002G079100--Sobic006G245900 Sobic001G482200 Sobic001G482200 Sobic002G079100--Sobic001G482200 Sobic003G077500--Sobic001G315400 Sobic007G125700 Sobic007G125700 Sobic003G077500--Sobic007G125700 Sobic001G372900 Sobic001G372900 Sobic003G077500--Sobic001G372900 Sobic002G334600 Sobic002G334600 Sobic003G077500--Sobic002G334600 Sobic002G219900 Sobic002G219900 Sobic003G077500--Sobic002G219900 Sobic006G254500 Sobic006G254500 Sobic003G077500--Sobic006G254500 Sobic003G077500--Sobic001G367100 Sobic004G315700 Sobic004G315700 Sobic003G077500--Sobic004G315700 Sobic009G031500 Sobic009G031500 Sobic003G077500--Sobic009G031500
Octagon: transcription factors


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