Gene annotation
Transcriptome id Sobic.002G130900.1
Synonym Sb02g011250
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A1B6QAY7
Pfam PF01529
Panther DB PTHR22883 PTHR22883:SF65
NCBI CDD KOG1311; DHHC-type Zn-finger proteins
KEGG Orthology K18932; palmitoyltransferase
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G15080 : DHHC-type zinc finger family protein
RAP-DB (Rice) LOC_Os09g38970.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a013518 , Zm00025a005635 , Zm00025a045908
Brachypodium KQJ99329 , KQJ91503 , KQJ99332 , KQJ99330 , KQJ99331 , PNT68567 , PNT68566 , PNT68565 , PNT68564
Barley HORVU7Hr1G058360.9 , HORVU7Hr1G058360.8 , HORVU7Hr1G058360.5 , HORVU7Hr1G058360.7 , HORVU7Hr1G058360.6 , HORVU7Hr1G058360.1 , HORVU7Hr1G058360.3 , HORVU7Hr1G058360.20 , HORVU7Hr1G058360.21 , HORVU5Hr1G090020.10 , HORVU5Hr1G090020.11 , HORVU7Hr1G058360.19 , HORVU7Hr1G058360.18 , HORVU7Hr1G058360.11 , HORVU7Hr1G058360.10 , HORVU7Hr1G058360.13 , HORVU7Hr1G058360.12 , HORVU7Hr1G058360.15 , HORVU7Hr1G058360.14 , HORVU7Hr1G058360.17 , HORVU7Hr1G058360.16 , HORVU5Hr1G090020.1 , HORVU5Hr1G090020.2 , HORVU5Hr1G090020.3 , HORVU5Hr1G090020.4 , HORVU5Hr1G090020.5 , HORVU5Hr1G090020.6 , HORVU5Hr1G090020.7 , HORVU5Hr1G090020.8 , HORVU5Hr1G090020.9
Wheat TraesCS5D02G375800 , TraesCS5A02G366200 , TraesCS7A02G277000 , TraesCS7D02G277000 , TraesCS7D02G277000 , TraesCS7B02G174700 , TraesCS5B02G368600
Populus -


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cDNA sequences
Sobic.002G130900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
2 Sobic.003G077500 expressed protein -
3 Sobic.001G367100 pleckstrin homology domain-containing protein, putative, expressed -
4 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
5 Sobic.001G358800 protein phosphatase 2C, putative, expressed -
6 Sobic.006G254500 IQ calmodulin-binding motif family protein, putative, expressed -
7 Sobic.001G315400 expressed protein -
8 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
9 Sobic.001G540700 expressed protein -
10 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -
11 Sobic.010G279900 PHD-finger domain containing protein, expressed -
12 Sobic.005G047300 OsFBT13 - F-box and tubby domain containing protein, expressed -
13 Sobic.004G128200 Probable LRR receptor-like serine/threonine-protein kinase At5g10290(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
14 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
15 Sobic.002G143200 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
16 Sobic.003G253400 expressed protein -
17 Sobic.001G352600 expressed protein -
18 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -
19 Sobic.001G143600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
20 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19


Gene co-expression network
sample Sobic002G130900 Sobic002G130900 Sobic007G125700 Sobic007G125700 Sobic002G130900--Sobic007G125700 Sobic003G077500 Sobic003G077500 Sobic002G130900--Sobic003G077500 Sobic001G367100 Sobic001G367100 Sobic002G130900--Sobic001G367100 Sobic001G372900 Sobic001G372900 Sobic002G130900--Sobic001G372900 Sobic001G358800 Sobic001G358800 Sobic002G130900--Sobic001G358800 Sobic006G254500 Sobic006G254500 Sobic002G130900--Sobic006G254500 Sobic001G315400 Sobic001G315400 Sobic002G130900--Sobic001G315400 Sobic001G385400 Sobic001G385400 Sobic002G130900--Sobic001G385400 Sobic001G540700 Sobic001G540700 Sobic002G130900--Sobic001G540700 Sobic002G430900 Sobic002G430900 Sobic007G125700--Sobic002G430900 Sobic004G207000 Sobic004G207000 Sobic007G125700--Sobic004G207000 Sobic010G149600 Sobic010G149600 Sobic007G125700--Sobic010G149600 Sobic010G269300 Sobic010G269300 Sobic007G125700--Sobic010G269300 Sobic002G219900 Sobic002G219900 Sobic007G125700--Sobic002G219900 Sobic007G125700--Sobic003G077500 Sobic001G395200 Sobic001G395200 Sobic007G125700--Sobic001G395200 Sobic004G043750 Sobic004G043750 Sobic007G125700--Sobic004G043750 Sobic006G280100 Sobic006G280100 Sobic007G125700--Sobic006G280100 Sobic003G077500--Sobic001G315400 Sobic003G077500--Sobic007G125700 Sobic003G077500--Sobic001G372900 Sobic002G334600 Sobic002G334600 Sobic003G077500--Sobic002G334600 Sobic003G077500--Sobic002G219900 Sobic003G077500--Sobic006G254500 Sobic003G077500--Sobic001G367100 Sobic004G315700 Sobic004G315700 Sobic003G077500--Sobic004G315700 Sobic009G031500 Sobic009G031500 Sobic003G077500--Sobic009G031500 Sobic010G279900 Sobic010G279900 Sobic001G367100--Sobic010G279900 Sobic001G367100--Sobic001G315400 Sobic001G245900 Sobic001G245900 Sobic001G367100--Sobic001G245900 Sobic003G023400 Sobic003G023400 Sobic001G367100--Sobic003G023400 Sobic008G080500 Sobic008G080500 Sobic001G367100--Sobic008G080500 Sobic009G151200 Sobic009G151200 Sobic001G367100--Sobic009G151200 Sobic004G128200 Sobic004G128200 Sobic001G367100--Sobic004G128200 Sobic002G079100 Sobic002G079100 Sobic001G367100--Sobic002G079100 Sobic001G367100--Sobic003G077500 Sobic001G499200 Sobic001G499200 Sobic001G372900--Sobic001G499200 Sobic001G296100 Sobic001G296100 Sobic001G372900--Sobic001G296100 Sobic001G372900--Sobic003G077500 Sobic006G081500 Sobic006G081500 Sobic001G372900--Sobic006G081500 Sobic001G157100 Sobic001G157100 Sobic001G372900--Sobic001G157100 Sobic006G084300 Sobic006G084300 Sobic001G372900--Sobic006G084300 Sobic001G372900--Sobic001G540700 Sobic008G172200 Sobic008G172200 Sobic001G372900--Sobic008G172200 Sobic001G372900--Sobic002G334600 Sobic001G358800--Sobic004G315700 Sobic002G132600 Sobic002G132600 Sobic001G358800--Sobic002G132600 Sobic001G358800--Sobic002G130900 Sobic001G358800--Sobic007G125700 Sobic001G358800--Sobic006G254500 Sobic001G358800--Sobic001G372900 Sobic001G358800--Sobic006G084300 Sobic001G122100 Sobic001G122100 Sobic001G358800--Sobic001G122100 Sobic001G358800--Sobic003G077500 Sobic006G267500 Sobic006G267500 Sobic006G254500--Sobic006G267500 Sobic009G212100 Sobic009G212100 Sobic006G254500--Sobic009G212100 Sobic006G254500--Sobic004G315700 Sobic002G393200 Sobic002G393200 Sobic006G254500--Sobic002G393200 Sobic007G166800 Sobic007G166800 Sobic006G254500--Sobic007G166800 Sobic001G285200 Sobic001G285200 Sobic006G254500--Sobic001G285200 Sobic006G254500--Sobic003G077500 Sobic001G487200 Sobic001G487200 Sobic006G254500--Sobic001G487200 Sobic009G206500 Sobic009G206500 Sobic006G254500--Sobic009G206500 Sobic001G315400--Sobic001G367100 Sobic001G315400--Sobic003G077500 Sobic001G315400--Sobic002G079100 Sobic002G002100 Sobic002G002100 Sobic001G315400--Sobic002G002100 Sobic005G047300 Sobic005G047300 Sobic001G315400--Sobic005G047300 Sobic002G223300 Sobic002G223300 Sobic001G315400--Sobic002G223300 Sobic001G315400--Sobic004G128200 Sobic004G227500 Sobic004G227500 Sobic001G315400--Sobic004G227500 Sobic001G315400--Sobic001G395200 Sobic001G143600 Sobic001G143600 Sobic001G385400--Sobic001G143600 Sobic002G143200 Sobic002G143200 Sobic001G385400--Sobic002G143200 Sobic003G435500 Sobic003G435500 Sobic001G385400--Sobic003G435500 Sobic008G015200 Sobic008G015200 Sobic001G385400--Sobic008G015200 Sobic010G250800 Sobic010G250800 Sobic001G385400--Sobic010G250800 Sobic001G507200 Sobic001G507200 Sobic001G385400--Sobic001G507200 Sobic001G385400--Sobic002G002100 Sobic009G167100 Sobic009G167100 Sobic001G385400--Sobic009G167100 Sobic006G140600 Sobic006G140600 Sobic001G385400--Sobic006G140600 Sobic002G284100 Sobic002G284100 Sobic001G540700--Sobic002G284100 Sobic007G197100 Sobic007G197100 Sobic001G540700--Sobic007G197100 Sobic001G540700--Sobic004G207000 Sobic004G267600 Sobic004G267600 Sobic001G540700--Sobic004G267600 Sobic001G540700--Sobic004G315700 Sobic006G272800 Sobic006G272800 Sobic001G540700--Sobic006G272800 Sobic001G540700--Sobic001G487200 Sobic001G369800 Sobic001G369800 Sobic001G540700--Sobic001G369800 Sobic003G345000 Sobic003G345000 Sobic001G540700--Sobic003G345000
Octagon: transcription factors


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