Gene annotation
Transcriptome id Sobic.001G226000.1
Synonym Sb01g019790, MAC3A
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6QKE9
Pfam PF00400 PF08606
Panther DB PTHR22840
NCBI CDD -
KEGG Orthology K10599; PRPF19, pre-mRNA-processing factor 19
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G04510 : MOS4-associated complex 3A
RAP-DB (Rice) LOC_Os10g32880.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006675 , Zm00025a031863 , Zm00025a017669 , Zm00025a025020 , Zm00025a048099
Brachypodium KQK23734 , KQJ97010
Barley HORVU1Hr1G039050.23 , HORVU1Hr1G039050.22 , HORVU1Hr1G039050.21 , HORVU1Hr1G039050.20 , HORVU1Hr1G039050.8 , HORVU1Hr1G039050.9 , HORVU1Hr1G039050.6 , HORVU1Hr1G039050.7 , HORVU4Hr1G083960.9 , HORVU4Hr1G083960.5 , HORVU4Hr1G083960.6 , HORVU4Hr1G083960.2 , HORVU4Hr1G083960.3 , HORVU1Hr1G039050.11 , HORVU1Hr1G039050.4 , HORVU1Hr1G039050.5 , HORVU1Hr1G039050.1 , HORVU1Hr1G039050.2 , HORVU1Hr1G039050.3 , HORVU1Hr1G039050.18 , HORVU1Hr1G039050.19 , HORVU1Hr1G039050.16 , HORVU1Hr1G039050.17 , HORVU1Hr1G039050.14 , HORVU1Hr1G039050.15 , HORVU1Hr1G039050.12 , HORVU1Hr1G039050.13 , HORVU1Hr1G039050.10 , HORVU4Hr1G083960.10
Wheat TraesCS4B02G341300 , TraesCS5A02G510600 , TraesCS1D02G145900 , TraesCS1D02G145900 , TraesCS1D02G145900 , TraesCS1D02G145900 , TraesCS4D02G337200 , TraesCS1A02G148000 , TraesCS1A02G148000 , TraesCS1A02G148000 , TraesCS1B02G165900 , TraesCS1B02G165900
Populus -


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cDNA sequences
Sobic.001G226000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
2 Sobic.006G278700 expressed protein -
3 Sobic.006G267300 expressed protein -
4 Sobic.003G115100 importin subunit alpha, putative, expressed -
5 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
6 Sobic.009G195200 ESP1, putative, expressed -
7 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
8 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
9 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
10 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
11 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
12 Sobic.005G025800 dual specificity protein phosphatase, putative, expressed K14819: DUSP12, dual specificity phosphatase 12
13 Sobic.004G133700 apoptosis inhibitor 5, putative, expressed -
14 Sobic.007G000800 expressed protein -
15 Sobic.007G027700 expressed protein -
16 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
17 Sobic.009G151200 expressed protein -
18 Sobic.003G220700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
19 Sobic.007G205000 zinc finger family protein, putative, expressed -
20 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G226000 Sobic001G226000 Sobic009G030300 Sobic009G030300 Sobic001G226000--Sobic009G030300 Sobic006G278700 Sobic006G278700 Sobic001G226000--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G226000--Sobic006G267300 Sobic003G115100 Sobic003G115100 Sobic001G226000--Sobic003G115100 Sobic002G077900 Sobic002G077900 Sobic001G226000--Sobic002G077900 Sobic009G195200 Sobic009G195200 Sobic001G226000--Sobic009G195200 Sobic003G433500 Sobic003G433500 Sobic001G226000--Sobic003G433500 Sobic001G010600 Sobic001G010600 Sobic001G226000--Sobic001G010600 Sobic004G013600 Sobic004G013600 Sobic001G226000--Sobic004G013600 Sobic002G177400 Sobic002G177400 Sobic009G030300--Sobic002G177400 Sobic009G030300--Sobic001G226000 Sobic004G061900 Sobic004G061900 Sobic009G030300--Sobic004G061900 Sobic009G044900 Sobic009G044900 Sobic009G030300--Sobic009G044900 Sobic009G030300--Sobic004G013600 Sobic004G088400 Sobic004G088400 Sobic009G030300--Sobic004G088400 Sobic008G117200 Sobic008G117200 Sobic009G030300--Sobic008G117200 Sobic002G334600 Sobic002G334600 Sobic009G030300--Sobic002G334600 Sobic008G129700 Sobic008G129700 Sobic009G030300--Sobic008G129700 Sobic002G378200 Sobic002G378200 Sobic006G278700--Sobic002G378200 Sobic006G252700 Sobic006G252700 Sobic006G278700--Sobic006G252700 Sobic007G205000 Sobic007G205000 Sobic006G278700--Sobic007G205000 Sobic001G360200 Sobic001G360200 Sobic006G278700--Sobic001G360200 Sobic003G401100 Sobic003G401100 Sobic006G278700--Sobic003G401100 Sobic001G143500 Sobic001G143500 Sobic006G278700--Sobic001G143500 Sobic006G278700--Sobic001G226000 Sobic007G118200 Sobic007G118200 Sobic006G278700--Sobic007G118200 Sobic008G004400 Sobic008G004400 Sobic006G278700--Sobic008G004400 Sobic007G111100 Sobic007G111100 Sobic006G267300--Sobic007G111100 Sobic009G257800 Sobic009G257800 Sobic006G267300--Sobic009G257800 Sobic003G205501 Sobic003G205501 Sobic006G267300--Sobic003G205501 Sobic001G408700 Sobic001G408700 Sobic006G267300--Sobic001G408700 Sobic006G267300--Sobic009G195200 Sobic006G267300--Sobic007G118200 Sobic010G202600 Sobic010G202600 Sobic006G267300--Sobic010G202600 Sobic006G267300--Sobic003G433500 Sobic008G127400 Sobic008G127400 Sobic006G267300--Sobic008G127400 Sobic003G115100--Sobic001G226000 Sobic009G151200 Sobic009G151200 Sobic003G115100--Sobic009G151200 Sobic003G115100--Sobic001G010600 Sobic003G115100--Sobic009G030300 Sobic007G195400 Sobic007G195400 Sobic003G115100--Sobic007G195400 Sobic003G115100--Sobic004G013600 Sobic005G216300 Sobic005G216300 Sobic003G115100--Sobic005G216300 Sobic002G058300 Sobic002G058300 Sobic003G115100--Sobic002G058300 Sobic004G011000 Sobic004G011000 Sobic003G115100--Sobic004G011000 Sobic001G168900 Sobic001G168900 Sobic002G077900--Sobic001G168900 Sobic002G077900--Sobic001G226000 Sobic001G370300 Sobic001G370300 Sobic002G077900--Sobic001G370300 Sobic003G420700 Sobic003G420700 Sobic002G077900--Sobic003G420700 Sobic004G307500 Sobic004G307500 Sobic002G077900--Sobic004G307500 Sobic009G058500 Sobic009G058500 Sobic002G077900--Sobic009G058500 Sobic009G258400 Sobic009G258400 Sobic002G077900--Sobic009G258400 Sobic006G044600 Sobic006G044600 Sobic002G077900--Sobic006G044600 Sobic010G193800 Sobic010G193800 Sobic002G077900--Sobic010G193800 Sobic002G259800 Sobic002G259800 Sobic009G195200--Sobic002G259800 Sobic009G195200--Sobic003G433500 Sobic009G195200--Sobic006G267300 Sobic002G264200 Sobic002G264200 Sobic009G195200--Sobic002G264200 Sobic001G246500 Sobic001G246500 Sobic009G195200--Sobic001G246500 Sobic003G355000 Sobic003G355000 Sobic009G195200--Sobic003G355000 Sobic007G091600 Sobic007G091600 Sobic009G195200--Sobic007G091600 Sobic001G306900 Sobic001G306900 Sobic009G195200--Sobic001G306900 Sobic009G195200--Sobic001G226000 Sobic003G433500--Sobic009G195200 Sobic003G433500--Sobic003G355000 Sobic002G045400 Sobic002G045400 Sobic003G433500--Sobic002G045400 Sobic009G216000 Sobic009G216000 Sobic003G433500--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic003G433500--Sobic003G354100 Sobic003G433500--Sobic006G267300 Sobic006G248500 Sobic006G248500 Sobic003G433500--Sobic006G248500 Sobic002G362300 Sobic002G362300 Sobic003G433500--Sobic002G362300 Sobic003G433500--Sobic002G259800 Sobic001G010600--Sobic002G058300 Sobic001G010600--Sobic007G205000 Sobic007G086500 Sobic007G086500 Sobic001G010600--Sobic007G086500 Sobic001G010600--Sobic001G226000 Sobic001G010600--Sobic003G115100 Sobic009G140700 Sobic009G140700 Sobic001G010600--Sobic009G140700 Sobic001G010600--Sobic004G013600 Sobic010G028300 Sobic010G028300 Sobic001G010600--Sobic010G028300 Sobic008G139700 Sobic008G139700 Sobic001G010600--Sobic008G139700 Sobic001G056200 Sobic001G056200 Sobic004G013600--Sobic001G056200 Sobic001G028400 Sobic001G028400 Sobic004G013600--Sobic001G028400 Sobic004G013600--Sobic003G354100 Sobic010G211300 Sobic010G211300 Sobic004G013600--Sobic010G211300 Sobic004G013600--Sobic006G248500 Sobic004G013600--Sobic007G205000 Sobic004G013600--Sobic009G030300 Sobic003G437500 Sobic003G437500 Sobic004G013600--Sobic003G437500 Sobic004G013600--Sobic007G118200
Octagon: transcription factors


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