Gene annotation
Transcriptome id Sobic.003G220700.1,Sobic.003G220700.2,Sobic.003G220700.3
Synonym Sb03g027910, HUA1
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt Q09EL7 , H0I4G3 , A0A1B6Q4P6 , A0A1B6Q4P3 , A0A1B6Q4P1
Pfam PF00642
Panther DB PTHR12547 PTHR12547:SF63
NCBI CDD KOG1677; CCCH-type Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12680 : floral homeotic protein (HUA1)
RAP-DB (Rice) LOC_Os01g42970.2,LOC_Os01g42970.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a038511 , Zm00025a028741
Brachypodium -
Barley HORVU3Hr1G054250.1 , HORVU3Hr1G054250.2 , HORVU3Hr1G054250.5 , HORVU3Hr1G054250.7 , HORVU3Hr1G054250.6 , HORVU3Hr1G054250.10
Wheat TraesCS3B02G251700 , TraesCS3B02G251700 , TraesCS3A02G221900 , TraesCS3A02G221900 , TraesCS3D02G231200 , TraesCS3D02G231200 , TraesCS3A02G221900
Populus PNT23413 , PNT23416 , PNT23414


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cDNA sequences
Sobic.003G220700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G114400 TBC domain containing protein, expressed -
2 Sobic.007G071200 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
3 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
4 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
5 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
6 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
7 Sobic.002G268400 expressed protein -
8 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
9 Sobic.002G357100 SUMO-activating enzyme subunit 2, putative, expressed K10685: UBLE1B, SAE2, ubiquitin-like 1-activating enzyme E1 B
10 Sobic.007G091600 proline rich protein 3, putative, expressed -
11 Sobic.005G154500 OsFBX407 - F-box domain containing protein, expressed -
12 Sobic.007G000800 expressed protein -
13 Sobic.001G023000 kelch motif family protein, putative, expressed -
14 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
15 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
16 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
17 Sobic.010G145800 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
18 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
19 Sobic.006G049100 expressed protein -
20 Sobic.006G278700 expressed protein -


Gene co-expression network
sample Sobic003G220700 Sobic003G220700 Sobic005G114400 Sobic005G114400 Sobic003G220700--Sobic005G114400 Sobic007G071200 Sobic007G071200 Sobic003G220700--Sobic007G071200 Sobic001G226000 Sobic001G226000 Sobic003G220700--Sobic001G226000 Sobic004G129300 Sobic004G129300 Sobic003G220700--Sobic004G129300 Sobic007G191700 Sobic007G191700 Sobic003G220700--Sobic007G191700 Sobic010G279700 Sobic010G279700 Sobic003G220700--Sobic010G279700 Sobic002G268400 Sobic002G268400 Sobic003G220700--Sobic002G268400 Sobic006G252100 Sobic006G252100 Sobic003G220700--Sobic006G252100 Sobic002G357100 Sobic002G357100 Sobic003G220700--Sobic002G357100 Sobic005G114400--Sobic003G220700 Sobic007G000800 Sobic007G000800 Sobic005G114400--Sobic007G000800 Sobic002G259800 Sobic002G259800 Sobic005G114400--Sobic002G259800 Sobic001G246500 Sobic001G246500 Sobic005G114400--Sobic001G246500 Sobic009G151200 Sobic009G151200 Sobic005G114400--Sobic009G151200 Sobic002G389800 Sobic002G389800 Sobic005G114400--Sobic002G389800 Sobic006G091000 Sobic006G091000 Sobic005G114400--Sobic006G091000 Sobic001G424600 Sobic001G424600 Sobic005G114400--Sobic001G424600 Sobic004G345700 Sobic004G345700 Sobic005G114400--Sobic004G345700 Sobic008G173100 Sobic008G173100 Sobic007G071200--Sobic008G173100 Sobic009G050900 Sobic009G050900 Sobic007G071200--Sobic009G050900 Sobic001G493200 Sobic001G493200 Sobic007G071200--Sobic001G493200 Sobic006G118700 Sobic006G118700 Sobic007G071200--Sobic006G118700 Sobic005G191900 Sobic005G191900 Sobic007G071200--Sobic005G191900 Sobic009G177500 Sobic009G177500 Sobic007G071200--Sobic009G177500 Sobic002G083500 Sobic002G083500 Sobic007G071200--Sobic002G083500 Sobic003G133900 Sobic003G133900 Sobic007G071200--Sobic003G133900 Sobic003G401100 Sobic003G401100 Sobic007G071200--Sobic003G401100 Sobic009G030300 Sobic009G030300 Sobic001G226000--Sobic009G030300 Sobic006G278700 Sobic006G278700 Sobic001G226000--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G226000--Sobic006G267300 Sobic003G115100 Sobic003G115100 Sobic001G226000--Sobic003G115100 Sobic002G077900 Sobic002G077900 Sobic001G226000--Sobic002G077900 Sobic009G195200 Sobic009G195200 Sobic001G226000--Sobic009G195200 Sobic003G433500 Sobic003G433500 Sobic001G226000--Sobic003G433500 Sobic001G010600 Sobic001G010600 Sobic001G226000--Sobic001G010600 Sobic004G013600 Sobic004G013600 Sobic001G226000--Sobic004G013600 Sobic010G237900 Sobic010G237900 Sobic004G129300--Sobic010G237900 Sobic004G129300--Sobic007G191700 Sobic001G002600 Sobic001G002600 Sobic004G129300--Sobic001G002600 Sobic007G091600 Sobic007G091600 Sobic004G129300--Sobic007G091600 Sobic007G090430 Sobic007G090430 Sobic004G129300--Sobic007G090430 Sobic004G129300--Sobic008G173100 Sobic001G087600 Sobic001G087600 Sobic004G129300--Sobic001G087600 Sobic007G183300 Sobic007G183300 Sobic004G129300--Sobic007G183300 Sobic001G384300 Sobic001G384300 Sobic004G129300--Sobic001G384300 Sobic007G191700--Sobic010G237900 Sobic007G191700--Sobic007G091600 Sobic007G191700--Sobic004G129300 Sobic001G395100 Sobic001G395100 Sobic007G191700--Sobic001G395100 Sobic005G079800 Sobic005G079800 Sobic007G191700--Sobic005G079800 Sobic007G191700--Sobic010G279700 Sobic007G191700--Sobic006G118700 Sobic007G041300 Sobic007G041300 Sobic007G191700--Sobic007G041300 Sobic001G473600 Sobic001G473600 Sobic007G191700--Sobic001G473600 Sobic001G281600 Sobic001G281600 Sobic010G279700--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic010G279700--Sobic008G083000 Sobic010G279700--Sobic003G401100 Sobic001G094900 Sobic001G094900 Sobic010G279700--Sobic001G094900 Sobic010G279700--Sobic007G191700 Sobic005G106500 Sobic005G106500 Sobic010G279700--Sobic005G106500 Sobic008G092300 Sobic008G092300 Sobic010G279700--Sobic008G092300 Sobic007G203200 Sobic007G203200 Sobic010G279700--Sobic007G203200 Sobic004G021200 Sobic004G021200 Sobic010G279700--Sobic004G021200 Sobic010G057900 Sobic010G057900 Sobic002G268400--Sobic010G057900 Sobic001G152000 Sobic001G152000 Sobic002G268400--Sobic001G152000 Sobic004G074300 Sobic004G074300 Sobic002G268400--Sobic004G074300 Sobic002G268400--Sobic006G252100 Sobic009G033900 Sobic009G033900 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic006G183000 Sobic006G183000 Sobic002G268400--Sobic006G183000 Sobic004G356900 Sobic004G356900 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800 Sobic006G252100--Sobic002G268400 Sobic006G252100--Sobic001G152000 Sobic006G252100--Sobic009G033900 Sobic006G216000 Sobic006G216000 Sobic006G252100--Sobic006G216000 Sobic006G252100--Sobic003G220700 Sobic006G094600 Sobic006G094600 Sobic006G252100--Sobic006G094600 Sobic001G226100 Sobic001G226100 Sobic006G252100--Sobic001G226100 Sobic006G252100--Sobic004G074300 Sobic001G370300 Sobic001G370300 Sobic006G252100--Sobic001G370300 Sobic004G156500 Sobic004G156500 Sobic002G357100--Sobic004G156500 Sobic006G067600 Sobic006G067600 Sobic002G357100--Sobic006G067600 Sobic006G210000 Sobic006G210000 Sobic002G357100--Sobic006G210000 Sobic009G129600 Sobic009G129600 Sobic002G357100--Sobic009G129600 Sobic002G357100--Sobic007G183300 Sobic002G357100--Sobic007G091600 Sobic002G357100--Sobic009G151200 Sobic008G100100 Sobic008G100100 Sobic002G357100--Sobic008G100100 Sobic002G357100--Sobic004G129300
Octagon: transcription factors


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