Gene annotation
Transcriptome id Sobic.006G278700.2,Sobic.006G278700.1
Synonym Sb06g033950
Functional annotation expressed protein
UniProt A0A1B6PPA5 , A0A1B6PPC2
Pfam PF13414
Panther DB PTHR22904 PTHR22904:SF289 PTHR22904:SF289 PTHR22904
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G08320 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g59394.2 : expressed protein
MaizeGDB (Corn) Zm00025a039696 , Zm00025a022473 , Zm00025a051739 , Zm00025a012186 , Zm00025a010537
Brachypodium KQJ85481 , KQJ85480
Barley HORVU2Hr1G125790.2 , HORVU2Hr1G125790.3 , HORVU2Hr1G125790.1 , HORVU2Hr1G125790.6 , HORVU2Hr1G125790.7 , HORVU2Hr1G125790.4 , HORVU2Hr1G125790.5 , HORVU2Hr1G125790.8 , HORVU5Hr1G058490.24 , HORVU5Hr1G058490.20 , HORVU5Hr1G058490.21 , HORVU5Hr1G058490.22 , HORVU5Hr1G058490.23 , HORVU2Hr1G125790.10 , HORVU2Hr1G125790.11 , HORVU2Hr1G125790.12 , HORVU2Hr1G125790.13 , HORVU2Hr1G125790.14 , HORVU2Hr1G125790.15 , HORVU2Hr1G125790.16 , HORVU5Hr1G058490.9 , HORVU5Hr1G058490.8 , HORVU5Hr1G058490.5 , HORVU5Hr1G058490.7 , HORVU5Hr1G058490.6 , HORVU5Hr1G058490.1 , HORVU5Hr1G058490.3 , HORVU5Hr1G058490.2 , HORVU2Hr1G125790.9 , HORVU5Hr1G058490.19 , HORVU5Hr1G058490.18 , HORVU5Hr1G058490.11 , HORVU5Hr1G058490.10 , HORVU5Hr1G058490.13 , HORVU5Hr1G058490.12 , HORVU5Hr1G058490.15 , HORVU5Hr1G058490.14 , HORVU5Hr1G058490.17 , HORVU5Hr1G058490.16
Wheat TraesCS2D02G578600 , TraesCS2B02G628700 , TraesCS2B02G628700 , TraesCS2A02G567900
Populus -


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cDNA sequences
Sobic.006G278700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
2 Sobic.006G252700 protein kinase domain containing protein, expressed -
3 Sobic.007G205000 zinc finger family protein, putative, expressed -
4 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
5 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
6 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
7 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
8 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
9 Sobic.008G004400 GIL1, putative, expressed -
10 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
11 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
12 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
13 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
14 Sobic.006G267300 expressed protein -
15 Sobic.009G198100 expressed protein -
16 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
17 Sobic.007G184500 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
18 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
19 Sobic.003G187200 phox domain-containing protein, putative, expressed -
20 Sobic.003G114700 NAK-like ser/thr protein kinase, putative, expressed -


Gene co-expression network
sample Sobic006G278700 Sobic006G278700 Sobic002G378200 Sobic002G378200 Sobic006G278700--Sobic002G378200 Sobic006G252700 Sobic006G252700 Sobic006G278700--Sobic006G252700 Sobic007G205000 Sobic007G205000 Sobic006G278700--Sobic007G205000 Sobic001G360200 Sobic001G360200 Sobic006G278700--Sobic001G360200 Sobic003G401100 Sobic003G401100 Sobic006G278700--Sobic003G401100 Sobic001G143500 Sobic001G143500 Sobic006G278700--Sobic001G143500 Sobic001G226000 Sobic001G226000 Sobic006G278700--Sobic001G226000 Sobic007G118200 Sobic007G118200 Sobic006G278700--Sobic007G118200 Sobic008G004400 Sobic008G004400 Sobic006G278700--Sobic008G004400 Sobic002G378200--Sobic006G278700 Sobic004G345700 Sobic004G345700 Sobic002G378200--Sobic004G345700 Sobic002G084300 Sobic002G084300 Sobic002G378200--Sobic002G084300 Sobic004G007300 Sobic004G007300 Sobic002G378200--Sobic004G007300 Sobic004G283000 Sobic004G283000 Sobic002G378200--Sobic004G283000 Sobic001G056200 Sobic001G056200 Sobic002G378200--Sobic001G056200 Sobic002G132300 Sobic002G132300 Sobic002G378200--Sobic002G132300 Sobic001G028400 Sobic001G028400 Sobic002G378200--Sobic001G028400 Sobic003G187200 Sobic003G187200 Sobic002G378200--Sobic003G187200 Sobic003G081000 Sobic003G081000 Sobic006G252700--Sobic003G081000 Sobic001G466700 Sobic001G466700 Sobic006G252700--Sobic001G466700 Sobic004G350100 Sobic004G350100 Sobic006G252700--Sobic004G350100 Sobic006G252700--Sobic001G143500 Sobic006G252700--Sobic007G118200 Sobic006G252700--Sobic006G278700 Sobic006G252700--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic006G252700--Sobic003G439800 Sobic002G034600 Sobic002G034600 Sobic006G252700--Sobic002G034600 Sobic007G205000--Sobic001G028400 Sobic007G205000--Sobic006G278700 Sobic007G205000--Sobic007G118200 Sobic009G198100 Sobic009G198100 Sobic007G205000--Sobic009G198100 Sobic010G033400 Sobic010G033400 Sobic007G205000--Sobic010G033400 Sobic004G013600 Sobic004G013600 Sobic007G205000--Sobic004G013600 Sobic006G267300 Sobic006G267300 Sobic007G205000--Sobic006G267300 Sobic001G010600 Sobic001G010600 Sobic007G205000--Sobic001G010600 Sobic007G205000--Sobic004G350100 Sobic001G360200--Sobic006G278700 Sobic004G066200 Sobic004G066200 Sobic001G360200--Sobic004G066200 Sobic007G184500 Sobic007G184500 Sobic001G360200--Sobic007G184500 Sobic001G360200--Sobic006G252700 Sobic002G300700 Sobic002G300700 Sobic001G360200--Sobic002G300700 Sobic001G360200--Sobic001G143500 Sobic009G058500 Sobic009G058500 Sobic001G360200--Sobic009G058500 Sobic009G228700 Sobic009G228700 Sobic001G360200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic001G360200--Sobic006G101700 Sobic010G236400 Sobic010G236400 Sobic003G401100--Sobic010G236400 Sobic004G084300 Sobic004G084300 Sobic003G401100--Sobic004G084300 Sobic001G281600 Sobic001G281600 Sobic003G401100--Sobic001G281600 Sobic003G401100--Sobic003G081000 Sobic007G027700 Sobic007G027700 Sobic003G401100--Sobic007G027700 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic004G274200 Sobic004G274200 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200 Sobic001G143500--Sobic006G252700 Sobic007G111100 Sobic007G111100 Sobic001G143500--Sobic007G111100 Sobic002G313500 Sobic002G313500 Sobic001G143500--Sobic002G313500 Sobic001G143500--Sobic004G350100 Sobic001G143500--Sobic003G401100 Sobic001G143500--Sobic003G439800 Sobic001G143500--Sobic001G466700 Sobic001G143500--Sobic006G278700 Sobic001G143500--Sobic006G267300 Sobic009G030300 Sobic009G030300 Sobic001G226000--Sobic009G030300 Sobic001G226000--Sobic006G278700 Sobic001G226000--Sobic006G267300 Sobic003G115100 Sobic003G115100 Sobic001G226000--Sobic003G115100 Sobic002G077900 Sobic002G077900 Sobic001G226000--Sobic002G077900 Sobic009G195200 Sobic009G195200 Sobic001G226000--Sobic009G195200 Sobic003G433500 Sobic003G433500 Sobic001G226000--Sobic003G433500 Sobic001G226000--Sobic001G010600 Sobic001G226000--Sobic004G013600 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic007G118200--Sobic004G350100 Sobic007G118200--Sobic009G198100 Sobic008G174300 Sobic008G174300 Sobic007G118200--Sobic008G174300 Sobic007G118200--Sobic002G034600 Sobic007G118200--Sobic006G252700 Sobic007G118200--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic007G118200--Sobic001G408700 Sobic004G356900 Sobic004G356900 Sobic008G004400--Sobic004G356900 Sobic008G004400--Sobic006G278700 Sobic008G004400--Sobic001G143500 Sobic007G053500 Sobic007G053500 Sobic008G004400--Sobic007G053500 Sobic008G004400--Sobic006G101700 Sobic008G004400--Sobic003G439800 Sobic002G281300 Sobic002G281300 Sobic008G004400--Sobic002G281300 Sobic005G004200 Sobic005G004200 Sobic008G004400--Sobic005G004200 Sobic008G004400--Sobic001G360200
Octagon: transcription factors


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