Gene annotation
Transcriptome id Sobic.010G145800.1
Synonym
Functional annotation KH domain containing protein, putative, expressed
UniProt A0A194YJB2
Pfam PF00013
Panther DB PTHR10288 PTHR10288:SF134
NCBI CDD KOG2190; PolyC-binding proteins alphaCP-1 and related KH domain proteins
KEGG Orthology K13162; poly(rC)-binding protein 2
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G53060 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os06g23460.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a042382 , Zm00025a050804
Brachypodium KQK18318 , KQK18319 , KQK18312 , KQK18317
Barley HORVU7Hr1G082230.1 , HORVU7Hr1G082230.2 , HORVU7Hr1G082230.3
Wheat TraesCS7A02G333800 , TraesCS7B02G245400 , TraesCS7B02G245400 , TraesCS7D02G341400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
2 Sobic.010G140400 poor homologous synapsis 1 protein, putative, expressed -
3 Sobic.001G002600 expressed protein -
4 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
5 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
6 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
7 Sobic.001G083400 expressed protein -
8 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
9 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
10 Sobic.007G090430 - -
11 Sobic.006G118700 MYB family transcription factor, putative, expressed -
12 Sobic.002G425500 ATPOT1, putative, expressed -
13 Sobic.001G155400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
14 Sobic.005G064000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
15 Sobic.001G384300 myb-like DNA-binding domain containing protein, expressed -
16 Sobic.001G540800 DNA binding protein, putative, expressed -
17 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
18 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
19 Sobic.001G407200 SacI homology domain containing protein, expressed -
20 Sobic.004G158400 AML1, putative, expressed -


Gene co-expression network
sample Sobic010G145800 Sobic010G145800 Sobic007G203200 Sobic007G203200 Sobic010G145800--Sobic007G203200 Sobic010G140400 Sobic010G140400 Sobic010G145800--Sobic010G140400 Sobic001G002600 Sobic001G002600 Sobic010G145800--Sobic001G002600 Sobic001G227200 Sobic001G227200 Sobic010G145800--Sobic001G227200 Sobic009G260500 Sobic009G260500 Sobic010G145800--Sobic009G260500 Sobic007G011600 Sobic007G011600 Sobic010G145800--Sobic007G011600 Sobic001G083400 Sobic001G083400 Sobic010G145800--Sobic001G083400 Sobic010G237900 Sobic010G237900 Sobic010G145800--Sobic010G237900 Sobic001G219600 Sobic001G219600 Sobic010G145800--Sobic001G219600 Sobic007G203200--Sobic010G145800 Sobic009G050900 Sobic009G050900 Sobic007G203200--Sobic009G050900 Sobic001G407200 Sobic001G407200 Sobic007G203200--Sobic001G407200 Sobic001G281600 Sobic001G281600 Sobic007G203200--Sobic001G281600 Sobic007G203200--Sobic010G140400 Sobic010G279700 Sobic010G279700 Sobic007G203200--Sobic010G279700 Sobic005G106500 Sobic005G106500 Sobic007G203200--Sobic005G106500 Sobic003G401100 Sobic003G401100 Sobic007G203200--Sobic003G401100 Sobic006G118700 Sobic006G118700 Sobic007G203200--Sobic006G118700 Sobic010G140400--Sobic010G145800 Sobic001G493200 Sobic001G493200 Sobic010G140400--Sobic001G493200 Sobic010G140400--Sobic001G219600 Sobic006G234700 Sobic006G234700 Sobic010G140400--Sobic006G234700 Sobic010G140400--Sobic007G203200 Sobic003G443100 Sobic003G443100 Sobic010G140400--Sobic003G443100 Sobic008G162900 Sobic008G162900 Sobic010G140400--Sobic008G162900 Sobic010G279450 Sobic010G279450 Sobic010G140400--Sobic010G279450 Sobic010G140400--Sobic001G227200 Sobic001G002600--Sobic010G237900 Sobic004G129300 Sobic004G129300 Sobic001G002600--Sobic004G129300 Sobic001G002600--Sobic010G145800 Sobic004G155600 Sobic004G155600 Sobic001G002600--Sobic004G155600 Sobic001G002600--Sobic006G118700 Sobic007G191700 Sobic007G191700 Sobic001G002600--Sobic007G191700 Sobic006G096900 Sobic006G096900 Sobic001G002600--Sobic006G096900 Sobic006G014100 Sobic006G014100 Sobic001G002600--Sobic006G014100 Sobic003G133900 Sobic003G133900 Sobic001G002600--Sobic003G133900 Sobic004G140600 Sobic004G140600 Sobic001G227200--Sobic004G140600 Sobic009G177500 Sobic009G177500 Sobic001G227200--Sobic009G177500 Sobic001G227200--Sobic005G106500 Sobic010G139000 Sobic010G139000 Sobic001G227200--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic001G227200--Sobic002G343901 Sobic004G258700 Sobic004G258700 Sobic001G227200--Sobic004G258700 Sobic001G311500 Sobic001G311500 Sobic001G227200--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic001G227200--Sobic001G036050 Sobic001G456900 Sobic001G456900 Sobic001G227200--Sobic001G456900 Sobic009G260500--Sobic001G219600 Sobic004G009600 Sobic004G009600 Sobic009G260500--Sobic004G009600 Sobic010G277500 Sobic010G277500 Sobic009G260500--Sobic010G277500 Sobic008G009700 Sobic008G009700 Sobic009G260500--Sobic008G009700 Sobic009G260500--Sobic010G139000 Sobic008G028700 Sobic008G028700 Sobic009G260500--Sobic008G028700 Sobic009G040600 Sobic009G040600 Sobic009G260500--Sobic009G040600 Sobic002G309600 Sobic002G309600 Sobic009G260500--Sobic002G309600 Sobic009G260500--Sobic001G311500 Sobic004G096500 Sobic004G096500 Sobic007G011600--Sobic004G096500 Sobic007G011600--Sobic010G145800 Sobic002G145800 Sobic002G145800 Sobic007G011600--Sobic002G145800 Sobic006G222300 Sobic006G222300 Sobic007G011600--Sobic006G222300 Sobic007G011600--Sobic010G279700 Sobic005G220000 Sobic005G220000 Sobic007G011600--Sobic005G220000 Sobic007G091600 Sobic007G091600 Sobic007G011600--Sobic007G091600 Sobic005G079800 Sobic005G079800 Sobic007G011600--Sobic005G079800 Sobic008G011100 Sobic008G011100 Sobic007G011600--Sobic008G011100 Sobic007G065400 Sobic007G065400 Sobic001G083400--Sobic007G065400 Sobic001G083400--Sobic002G309600 Sobic009G210500 Sobic009G210500 Sobic001G083400--Sobic009G210500 Sobic001G083400--Sobic010G277500 Sobic001G026200 Sobic001G026200 Sobic001G083400--Sobic001G026200 Sobic008G113100 Sobic008G113100 Sobic001G083400--Sobic008G113100 Sobic010G069100 Sobic010G069100 Sobic001G083400--Sobic010G069100 Sobic007G117400 Sobic007G117400 Sobic001G083400--Sobic007G117400 Sobic001G083400--Sobic009G040600 Sobic010G237900--Sobic004G129300 Sobic010G237900--Sobic007G191700 Sobic010G237900--Sobic001G002600 Sobic007G084100 Sobic007G084100 Sobic010G237900--Sobic007G084100 Sobic002G425500 Sobic002G425500 Sobic010G237900--Sobic002G425500 Sobic010G237900--Sobic006G014100 Sobic003G121300 Sobic003G121300 Sobic010G237900--Sobic003G121300 Sobic004G156800 Sobic004G156800 Sobic010G237900--Sobic004G156800 Sobic010G237900--Sobic010G145800 Sobic001G219600--Sobic009G260500 Sobic001G219600--Sobic002G309600 Sobic002G317200 Sobic002G317200 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000
Octagon: transcription factors


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