Gene annotation
Transcriptome id Sobic.001G540800.1
Synonym Sb01g050300
Functional annotation DNA binding protein, putative, expressed
UniProt A0A1B6QR63
Pfam PF03479
Panther DB PTHR31500 PTHR31500:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33620 : AT hook motif DNA-binding family protein
RAP-DB (Rice) LOC_Os03g01540.1 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a053583
Brachypodium KQK24111 , KQK24112
Barley -
Wheat TraesCS4B02G366400 , TraesCS5A02G534200
Populus -


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cDNA sequences
Sobic.001G540800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
2 Sobic.002G425500 ATPOT1, putative, expressed -
3 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
4 Sobic.010G145800 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
5 Sobic.004G019500 pentatricopeptide, putative, expressed -
6 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
7 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
8 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
9 Sobic.002G309200 FAR1 family protein, expressed -
10 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
11 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
12 Sobic.008G092532 - -
13 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
14 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
15 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
16 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
17 Sobic.004G253100 armadillo/beta-catenin repeat family protein, putative, expressed -
18 Sobic.002G431400 - -
19 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
20 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G540800 Sobic001G540800 Sobic006G036100 Sobic006G036100 Sobic001G540800--Sobic006G036100 Sobic002G425500 Sobic002G425500 Sobic001G540800--Sobic002G425500 Sobic002G145800 Sobic002G145800 Sobic001G540800--Sobic002G145800 Sobic010G145800 Sobic010G145800 Sobic001G540800--Sobic010G145800 Sobic004G019500 Sobic004G019500 Sobic001G540800--Sobic004G019500 Sobic001G227200 Sobic001G227200 Sobic001G540800--Sobic001G227200 Sobic006G269800 Sobic006G269800 Sobic001G540800--Sobic006G269800 Sobic001G020000 Sobic001G020000 Sobic001G540800--Sobic001G020000 Sobic002G309200 Sobic002G309200 Sobic001G540800--Sobic002G309200 Sobic010G174700 Sobic010G174700 Sobic006G036100--Sobic010G174700 Sobic006G036100--Sobic001G540800 Sobic010G053600 Sobic010G053600 Sobic006G036100--Sobic010G053600 Sobic001G004400 Sobic001G004400 Sobic006G036100--Sobic001G004400 Sobic002G391600 Sobic002G391600 Sobic006G036100--Sobic002G391600 Sobic002G133300 Sobic002G133300 Sobic006G036100--Sobic002G133300 Sobic003G266001 Sobic003G266001 Sobic006G036100--Sobic003G266001 Sobic003G294600 Sobic003G294600 Sobic006G036100--Sobic003G294600 Sobic001G352900 Sobic001G352900 Sobic006G036100--Sobic001G352900 Sobic002G425500--Sobic001G020000 Sobic001G155400 Sobic001G155400 Sobic002G425500--Sobic001G155400 Sobic003G188400 Sobic003G188400 Sobic002G425500--Sobic003G188400 Sobic004G107200 Sobic004G107200 Sobic002G425500--Sobic004G107200 Sobic007G183900 Sobic007G183900 Sobic002G425500--Sobic007G183900 Sobic004G185800 Sobic004G185800 Sobic002G425500--Sobic004G185800 Sobic002G425500--Sobic001G227200 Sobic008G002500 Sobic008G002500 Sobic002G425500--Sobic008G002500 Sobic004G155600 Sobic004G155600 Sobic002G425500--Sobic004G155600 Sobic002G145800--Sobic006G269800 Sobic003G416700 Sobic003G416700 Sobic002G145800--Sobic003G416700 Sobic007G183300 Sobic007G183300 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic001G051700 Sobic001G051700 Sobic002G145800--Sobic001G051700 Sobic003G062300 Sobic003G062300 Sobic002G145800--Sobic003G062300 Sobic008G147200 Sobic008G147200 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600 Sobic007G203200 Sobic007G203200 Sobic010G145800--Sobic007G203200 Sobic010G140400 Sobic010G140400 Sobic010G145800--Sobic010G140400 Sobic001G002600 Sobic001G002600 Sobic010G145800--Sobic001G002600 Sobic010G145800--Sobic001G227200 Sobic009G260500 Sobic009G260500 Sobic010G145800--Sobic009G260500 Sobic007G011600 Sobic007G011600 Sobic010G145800--Sobic007G011600 Sobic001G083400 Sobic001G083400 Sobic010G145800--Sobic001G083400 Sobic010G237900 Sobic010G237900 Sobic010G145800--Sobic010G237900 Sobic001G219600 Sobic001G219600 Sobic010G145800--Sobic001G219600 Sobic004G144400 Sobic004G144400 Sobic004G019500--Sobic004G144400 Sobic004G019500--Sobic001G540800 Sobic009G214200 Sobic009G214200 Sobic004G019500--Sobic009G214200 Sobic001G326300 Sobic001G326300 Sobic004G019500--Sobic001G326300 Sobic007G210000 Sobic007G210000 Sobic004G019500--Sobic007G210000 Sobic001G022500 Sobic001G022500 Sobic004G019500--Sobic001G022500 Sobic004G225600 Sobic004G225600 Sobic004G019500--Sobic004G225600 Sobic003G434700 Sobic003G434700 Sobic004G019500--Sobic003G434700 Sobic004G003900 Sobic004G003900 Sobic004G019500--Sobic004G003900 Sobic004G140600 Sobic004G140600 Sobic001G227200--Sobic004G140600 Sobic009G177500 Sobic009G177500 Sobic001G227200--Sobic009G177500 Sobic005G106500 Sobic005G106500 Sobic001G227200--Sobic005G106500 Sobic010G139000 Sobic010G139000 Sobic001G227200--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic001G227200--Sobic002G343901 Sobic004G258700 Sobic004G258700 Sobic001G227200--Sobic004G258700 Sobic001G311500 Sobic001G311500 Sobic001G227200--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic001G227200--Sobic001G036050 Sobic001G456900 Sobic001G456900 Sobic001G227200--Sobic001G456900 Sobic006G269800--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic006G269800--Sobic003G052800 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic001G393900 Sobic001G393900 Sobic006G269800--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic006G269800--Sobic004G107200 Sobic006G269800--Sobic002G425500 Sobic001G020000--Sobic001G219600 Sobic001G433800 Sobic001G433800 Sobic001G020000--Sobic001G433800 Sobic002G317200 Sobic002G317200 Sobic001G020000--Sobic002G317200 Sobic001G354600 Sobic001G354600 Sobic001G020000--Sobic001G354600 Sobic001G020000--Sobic001G087600 Sobic001G020000--Sobic002G425500 Sobic003G095900 Sobic003G095900 Sobic001G020000--Sobic003G095900 Sobic001G020000--Sobic001G352900 Sobic004G124300 Sobic004G124300 Sobic001G020000--Sobic004G124300 Sobic002G309200--Sobic004G155600 Sobic005G191900 Sobic005G191900 Sobic002G309200--Sobic005G191900 Sobic008G011100 Sobic008G011100 Sobic002G309200--Sobic008G011100 Sobic007G071200 Sobic007G071200 Sobic002G309200--Sobic007G071200 Sobic002G309200--Sobic001G540800 Sobic004G096500 Sobic004G096500 Sobic002G309200--Sobic004G096500 Sobic002G309200--Sobic002G145800 Sobic003G133900 Sobic003G133900 Sobic002G309200--Sobic003G133900 Sobic002G309200--Sobic007G011600
Octagon: transcription factors


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