Gene annotation
Transcriptome id Sobic.006G269800.1
Synonym Sb06g033130
Functional annotation TFIIH basal transcription factor complex p52 subunit, putative, expressed
UniProt C5YAL3
Pfam PF03849
Panther DB PTHR13152
NCBI CDD KOG3471; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2
KEGG Orthology K03144; TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
Gene Ontology GO:0000439; transcription factor TFIIH core complex GO:0004003DNA helicase activity GO:0005634nucleus GO:0006289nucleotide-excision repair


Orthologs (automatic annotation)
TAIR AT4G17020 : transcription factor-related
RAP-DB (Rice) LOC_Os04g58350.1 : TFIIH basal transcription factor complex p52 subunit, putative, expressed
MaizeGDB (Corn) Zm00025a009270
Brachypodium PNT62154 , PNT62155 , PNT62156 , PNT62153 , KQK16741 , PNT75329 , PNT75328 , PNT75327 , PNT75326 , KQJ85331 , PNT75332
Barley -
Wheat TraesCS2B02G596300 , TraesCS2A02G587100 , TraesCS2D02G599500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
2 Sobic.003G052800 RST1, putative, expressed -
3 Sobic.008G147200 tubulin, putative, expressed -
4 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
5 Sobic.001G393900 FAD binding domain containing protein, expressed -
6 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
7 Sobic.001G417500 expressed protein -
8 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
9 Sobic.002G425500 ATPOT1, putative, expressed -
10 Sobic.001G540800 DNA binding protein, putative, expressed -
11 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
12 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
13 Sobic.010G174700 expressed protein -
14 Sobic.006G267600 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
15 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
16 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
17 Sobic.005G191700 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
18 Sobic.004G351800 PPR repeat containing protein, expressed -
19 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
20 Sobic.002G309200 FAR1 family protein, expressed -


Gene co-expression network
sample Sobic006G269800 Sobic006G269800 Sobic002G145800 Sobic002G145800 Sobic006G269800--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic006G269800--Sobic003G052800 Sobic008G147200 Sobic008G147200 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic001G393900 Sobic001G393900 Sobic006G269800--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500 Sobic002G145800--Sobic006G269800 Sobic003G416700 Sobic003G416700 Sobic002G145800--Sobic003G416700 Sobic007G183300 Sobic007G183300 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic001G051700 Sobic001G051700 Sobic002G145800--Sobic001G051700 Sobic003G062300 Sobic003G062300 Sobic002G145800--Sobic003G062300 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600 Sobic003G052800--Sobic006G269800 Sobic003G052800--Sobic002G145800 Sobic002G430300 Sobic002G430300 Sobic003G052800--Sobic002G430300 Sobic002G371600 Sobic002G371600 Sobic003G052800--Sobic002G371600 Sobic002G372500 Sobic002G372500 Sobic003G052800--Sobic002G372500 Sobic003G052800--Sobic001G051700 Sobic003G052800--Sobic002G043100 Sobic010G174700 Sobic010G174700 Sobic003G052800--Sobic010G174700 Sobic003G217200 Sobic003G217200 Sobic003G052800--Sobic003G217200 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic008G147200--Sobic006G269800 Sobic008G147200--Sobic010G186600 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic001G346900 Sobic001G346900 Sobic008G147200--Sobic001G346900 Sobic003G042400 Sobic003G042400 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800 Sobic004G119400 Sobic004G119400 Sobic008G017100--Sobic004G119400 Sobic008G017100--Sobic006G269800 Sobic010G224700 Sobic010G224700 Sobic008G017100--Sobic010G224700 Sobic006G185200 Sobic006G185200 Sobic008G017100--Sobic006G185200 Sobic002G079100 Sobic002G079100 Sobic008G017100--Sobic002G079100 Sobic002G378100 Sobic002G378100 Sobic008G017100--Sobic002G378100 Sobic004G351800 Sobic004G351800 Sobic008G017100--Sobic004G351800 Sobic007G171100 Sobic007G171100 Sobic008G017100--Sobic007G171100 Sobic008G017100--Sobic008G147200 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G089600 Sobic001G089600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic001G393900--Sobic003G042400 Sobic002G043100--Sobic004G107200 Sobic001G451300 Sobic001G451300 Sobic002G043100--Sobic001G451300 Sobic001G501800 Sobic001G501800 Sobic002G043100--Sobic001G501800 Sobic002G043100--Sobic002G399800 Sobic010G262100 Sobic010G262100 Sobic002G043100--Sobic010G262100 Sobic002G043100--Sobic006G269800 Sobic002G043100--Sobic003G309050 Sobic002G043100--Sobic002G425500 Sobic002G043100--Sobic001G393900 Sobic001G417500--Sobic006G269800 Sobic001G417500--Sobic004G351800 Sobic001G417500--Sobic003G309050 Sobic001G417500--Sobic002G043100 Sobic001G417500--Sobic001G393900 Sobic001G417500--Sobic008G017100 Sobic001G417500--Sobic004G107200 Sobic001G417500--Sobic007G173500 Sobic007G000300 Sobic007G000300 Sobic001G417500--Sobic007G000300 Sobic002G431400 Sobic002G431400 Sobic004G107200--Sobic002G431400 Sobic004G107200--Sobic002G425500 Sobic006G119400 Sobic006G119400 Sobic004G107200--Sobic006G119400 Sobic003G101500 Sobic003G101500 Sobic004G107200--Sobic003G101500 Sobic004G107200--Sobic002G043100 Sobic004G107200--Sobic001G501800 Sobic001G456900 Sobic001G456900 Sobic004G107200--Sobic001G456900 Sobic001G261900 Sobic001G261900 Sobic004G107200--Sobic001G261900 Sobic004G107200--Sobic006G269800 Sobic001G020000 Sobic001G020000 Sobic002G425500--Sobic001G020000 Sobic001G155400 Sobic001G155400 Sobic002G425500--Sobic001G155400 Sobic003G188400 Sobic003G188400 Sobic002G425500--Sobic003G188400 Sobic002G425500--Sobic004G107200 Sobic007G183900 Sobic007G183900 Sobic002G425500--Sobic007G183900 Sobic004G185800 Sobic004G185800 Sobic002G425500--Sobic004G185800 Sobic001G227200 Sobic001G227200 Sobic002G425500--Sobic001G227200 Sobic008G002500 Sobic008G002500 Sobic002G425500--Sobic008G002500 Sobic004G155600 Sobic004G155600 Sobic002G425500--Sobic004G155600
Octagon: transcription factors


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