Gene annotation
Transcriptome id Sobic.005G191700.1
Synonym UBP1B, Sb05g024850
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt Q8LJX6 , C5Y6G8
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF379
NCBI CDD KOG0148; Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology K13201; TIA1, nucleolysin TIA-1/TIAR
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G17370 : oligouridylate binding protein 1B
RAP-DB (Rice) LOC_Os11g40510.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a057294 , Zm00025a057292 , Zm00025a057288 , Zm00025a029331
Brachypodium KQJ87749
Barley HORVU4Hr1G033990.3 , HORVU4Hr1G033990.1 , HORVU4Hr1G033990.9 , HORVU4Hr1G033990.6 , HORVU4Hr1G033990.7 , HORVU4Hr1G033990.4 , HORVU4Hr1G033990.5 , HORVU4Hr1G033990.2
Wheat TraesCS4A02G150000 , TraesCS4A02G150000 , TraesCS4D02G150600 , TraesCS4D02G150600
Populus -


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cDNA sequences
Sobic.005G191700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
2 Sobic.005G046900 expressed protein K08331: autophagy-related protein 13
3 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
4 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
5 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
6 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
7 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
8 Sobic.001G373400 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
9 Sobic.002G029100 GYF domain containing protein, putative, expressed -
10 Sobic.003G052800 RST1, putative, expressed -
11 Sobic.003G214700 transcriptional corepressor LEUNIG, putative, expressed -
12 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
13 Sobic.008G147200 tubulin, putative, expressed -
14 Sobic.007G000300 expressed protein -
15 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
16 Sobic.010G215900 type II intron maturase protein, putative, expressed -
17 Sobic.001G542450 - -
18 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
19 Sobic.003G016900 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
20 Sobic.001G355200 tRNA pseudouridine synthase family protein, putative, expressed K01855: PUS3, tRNA pseudouridine38/39 synthase


Gene co-expression network
sample Sobic005G191700 Sobic005G191700 Sobic006G269800 Sobic006G269800 Sobic005G191700--Sobic006G269800 Sobic005G046900 Sobic005G046900 Sobic005G191700--Sobic005G046900 Sobic002G145800 Sobic002G145800 Sobic005G191700--Sobic002G145800 Sobic001G013300 Sobic001G013300 Sobic005G191700--Sobic001G013300 Sobic003G409200 Sobic003G409200 Sobic005G191700--Sobic003G409200 Sobic008G057000 Sobic008G057000 Sobic005G191700--Sobic008G057000 Sobic003G062300 Sobic003G062300 Sobic005G191700--Sobic003G062300 Sobic001G373400 Sobic001G373400 Sobic005G191700--Sobic001G373400 Sobic002G029100 Sobic002G029100 Sobic005G191700--Sobic002G029100 Sobic006G269800--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic006G269800--Sobic003G052800 Sobic008G147200 Sobic008G147200 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic001G393900 Sobic001G393900 Sobic006G269800--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500 Sobic006G276000 Sobic006G276000 Sobic005G046900--Sobic006G276000 Sobic007G041300 Sobic007G041300 Sobic005G046900--Sobic007G041300 Sobic005G079800 Sobic005G079800 Sobic005G046900--Sobic005G079800 Sobic003G427100 Sobic003G427100 Sobic005G046900--Sobic003G427100 Sobic005G046900--Sobic001G013300 Sobic006G120800 Sobic006G120800 Sobic005G046900--Sobic006G120800 Sobic005G046900--Sobic008G057000 Sobic005G046900--Sobic005G191700 Sobic005G046900--Sobic003G409200 Sobic002G145800--Sobic006G269800 Sobic003G416700 Sobic003G416700 Sobic002G145800--Sobic003G416700 Sobic007G183300 Sobic007G183300 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic001G051700 Sobic001G051700 Sobic002G145800--Sobic001G051700 Sobic002G145800--Sobic003G062300 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G373000 Sobic001G373000 Sobic001G013300--Sobic001G373000 Sobic001G013300--Sobic008G147200 Sobic001G346900 Sobic001G346900 Sobic001G013300--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic001G013300--Sobic003G409200 Sobic007G187600 Sobic007G187600 Sobic001G013300--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic001G013300--Sobic001G023800 Sobic003G409200--Sobic001G346900 Sobic003G409200--Sobic010G215900 Sobic004G111000 Sobic004G111000 Sobic003G409200--Sobic004G111000 Sobic003G409200--Sobic008G057000 Sobic003G409200--Sobic003G427100 Sobic001G501800 Sobic001G501800 Sobic003G409200--Sobic001G501800 Sobic003G409200--Sobic004G285000 Sobic010G279900 Sobic010G279900 Sobic003G409200--Sobic010G279900 Sobic003G409200--Sobic002G145800 Sobic008G057000--Sobic003G409200 Sobic005G200800 Sobic005G200800 Sobic008G057000--Sobic005G200800 Sobic008G057000--Sobic001G346900 Sobic004G086200 Sobic004G086200 Sobic008G057000--Sobic004G086200 Sobic002G148400 Sobic002G148400 Sobic008G057000--Sobic002G148400 Sobic008G057000--Sobic010G279900 Sobic001G484200 Sobic001G484200 Sobic008G057000--Sobic001G484200 Sobic009G032200 Sobic009G032200 Sobic008G057000--Sobic009G032200 Sobic008G057000--Sobic007G183300 Sobic006G224800 Sobic006G224800 Sobic003G062300--Sobic006G224800 Sobic004G309900 Sobic004G309900 Sobic003G062300--Sobic004G309900 Sobic003G062300--Sobic002G145800 Sobic003G062300--Sobic003G416700 Sobic005G220000 Sobic005G220000 Sobic003G062300--Sobic005G220000 Sobic003G062300--Sobic001G051700 Sobic002G164200 Sobic002G164200 Sobic003G062300--Sobic002G164200 Sobic003G214600 Sobic003G214600 Sobic003G062300--Sobic003G214600 Sobic003G062300--Sobic007G183300 Sobic001G246500 Sobic001G246500 Sobic001G373400--Sobic001G246500 Sobic003G413100 Sobic003G413100 Sobic001G373400--Sobic003G413100 Sobic008G173100 Sobic008G173100 Sobic001G373400--Sobic008G173100 Sobic001G155400 Sobic001G155400 Sobic001G373400--Sobic001G155400 Sobic002G063900 Sobic002G063900 Sobic001G373400--Sobic002G063900 Sobic010G096000 Sobic010G096000 Sobic001G373400--Sobic010G096000 Sobic001G042200 Sobic001G042200 Sobic001G373400--Sobic001G042200 Sobic009G074700 Sobic009G074700 Sobic001G373400--Sobic009G074700 Sobic009G126600 Sobic009G126600 Sobic001G373400--Sobic009G126600 Sobic004G311400 Sobic004G311400 Sobic002G029100--Sobic004G311400 Sobic002G029100--Sobic003G214600 Sobic002G029100--Sobic005G200800 Sobic009G255600 Sobic009G255600 Sobic002G029100--Sobic009G255600 Sobic002G029100--Sobic007G183300 Sobic002G245000 Sobic002G245000 Sobic002G029100--Sobic002G245000 Sobic002G029100--Sobic010G186600 Sobic002G029100--Sobic002G164200 Sobic008G002300 Sobic008G002300 Sobic002G029100--Sobic008G002300
Octagon: transcription factors


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