Gene annotation
Transcriptome id Sobic.003G016900.1,Sobic.003G016900.4,Sobic.003G016900.5
Synonym Sb03g001680
Functional annotation splicing factor 3B subunit 1, putative, expressed
UniProt C5XKG3
Pfam PF08920
Panther DB PTHR12097 PTHR12097:SF1
NCBI CDD -
KEGG Orthology K12828; SF3B1, splicing factor 3B subunit 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G64270 : splicing factor, putative
RAP-DB (Rice) LOC_Os02g05310.2,LOC_Os02g05310.4 : splicing factor 3B subunit 1, putative, expressed
MaizeGDB (Corn) Zm00025a034892 , Zm00025a018966
Brachypodium KQJ93293 , KQJ93292 , KQJ93297 , KQJ93296 , KQJ93295 , KQJ93294 , KQK21234
Barley HORVU6Hr1G020850.3 , HORVU6Hr1G020850.4 , HORVU6Hr1G065110.2 , HORVU6Hr1G065110.1 , HORVU7Hr1G022470.1 , HORVU0Hr1G014020.1 , HORVU7Hr1G022470.2 , HORVU7Hr1G022470.3 , HORVU6Hr1G020850.1 , HORVU6Hr1G020850.2 , HORVU6Hr1G020850.5 , HORVU0Hr1G009840.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G173500 growth regulator related protein, putative, expressed -
2 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
3 Sobic.007G000300 expressed protein -
4 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
5 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
6 Sobic.010G094700 aberrant root formation protein 4, putative, expressed -
7 Sobic.001G393900 FAD binding domain containing protein, expressed -
8 Sobic.003G133900 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
9 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
10 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
11 Sobic.006G281700 DUF803 domain containing, putative, expressed -
12 Sobic.003G379200 wound-responsive family protein, putative, expressed -
13 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
14 Sobic.002G154000 EDM2, putative, expressed -
15 Sobic.010G130100 BAH domain containing protein, expressed -
16 Sobic.003G362900 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
17 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
18 Sobic.010G001100 chromo domain containing protein, expressed -
19 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
20 Sobic.001G398800 FHA domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G016900 Sobic003G016900 Sobic007G173500 Sobic007G173500 Sobic003G016900--Sobic007G173500 Sobic004G309900 Sobic004G309900 Sobic003G016900--Sobic004G309900 Sobic007G000300 Sobic007G000300 Sobic003G016900--Sobic007G000300 Sobic006G088200 Sobic006G088200 Sobic003G016900--Sobic006G088200 Sobic003G062300 Sobic003G062300 Sobic003G016900--Sobic003G062300 Sobic010G094700 Sobic010G094700 Sobic003G016900--Sobic010G094700 Sobic001G393900 Sobic001G393900 Sobic003G016900--Sobic001G393900 Sobic003G133900 Sobic003G133900 Sobic003G016900--Sobic003G133900 Sobic009G228000 Sobic009G228000 Sobic003G016900--Sobic009G228000 Sobic007G173500--Sobic001G393900 Sobic001G020000 Sobic001G020000 Sobic007G173500--Sobic001G020000 Sobic007G212300 Sobic007G212300 Sobic007G173500--Sobic007G212300 Sobic003G095900 Sobic003G095900 Sobic007G173500--Sobic003G095900 Sobic003G260400 Sobic003G260400 Sobic007G173500--Sobic003G260400 Sobic007G173500--Sobic004G309900 Sobic007G173500--Sobic003G016900 Sobic004G124300 Sobic004G124300 Sobic007G173500--Sobic004G124300 Sobic006G096900 Sobic006G096900 Sobic007G173500--Sobic006G096900 Sobic004G309900--Sobic003G133900 Sobic007G183900 Sobic007G183900 Sobic004G309900--Sobic007G183900 Sobic004G309900--Sobic003G062300 Sobic006G077200 Sobic006G077200 Sobic004G309900--Sobic006G077200 Sobic004G096400 Sobic004G096400 Sobic004G309900--Sobic004G096400 Sobic002G366400 Sobic002G366400 Sobic004G309900--Sobic002G366400 Sobic006G210000 Sobic006G210000 Sobic004G309900--Sobic006G210000 Sobic003G416700 Sobic003G416700 Sobic004G309900--Sobic003G416700 Sobic001G008200 Sobic001G008200 Sobic004G309900--Sobic001G008200 Sobic001G275300 Sobic001G275300 Sobic007G000300--Sobic001G275300 Sobic003G241700 Sobic003G241700 Sobic007G000300--Sobic003G241700 Sobic007G000300--Sobic001G393900 Sobic007G000300--Sobic006G088200 Sobic007G000300--Sobic003G062300 Sobic007G000300--Sobic003G016900 Sobic001G261900 Sobic001G261900 Sobic007G000300--Sobic001G261900 Sobic007G000300--Sobic007G212300 Sobic007G000300--Sobic007G173500 Sobic006G088200--Sobic003G095900 Sobic003G360400 Sobic003G360400 Sobic006G088200--Sobic003G360400 Sobic001G493700 Sobic001G493700 Sobic006G088200--Sobic001G493700 Sobic006G088200--Sobic001G275300 Sobic002G133300 Sobic002G133300 Sobic006G088200--Sobic002G133300 Sobic003G379200 Sobic003G379200 Sobic006G088200--Sobic003G379200 Sobic003G214600 Sobic003G214600 Sobic006G088200--Sobic003G214600 Sobic001G433800 Sobic001G433800 Sobic006G088200--Sobic001G433800 Sobic001G227400 Sobic001G227400 Sobic006G088200--Sobic001G227400 Sobic006G224800 Sobic006G224800 Sobic003G062300--Sobic006G224800 Sobic003G062300--Sobic004G309900 Sobic002G145800 Sobic002G145800 Sobic003G062300--Sobic002G145800 Sobic003G062300--Sobic003G416700 Sobic005G220000 Sobic005G220000 Sobic003G062300--Sobic005G220000 Sobic001G051700 Sobic001G051700 Sobic003G062300--Sobic001G051700 Sobic002G164200 Sobic002G164200 Sobic003G062300--Sobic002G164200 Sobic003G062300--Sobic003G214600 Sobic007G183300 Sobic007G183300 Sobic003G062300--Sobic007G183300 Sobic005G191900 Sobic005G191900 Sobic010G094700--Sobic005G191900 Sobic009G109200 Sobic009G109200 Sobic010G094700--Sobic009G109200 Sobic010G279450 Sobic010G279450 Sobic010G094700--Sobic010G279450 Sobic010G079500 Sobic010G079500 Sobic010G094700--Sobic010G079500 Sobic001G529600 Sobic001G529600 Sobic010G094700--Sobic001G529600 Sobic010G094700--Sobic004G096400 Sobic001G311500 Sobic001G311500 Sobic010G094700--Sobic001G311500 Sobic008G132900 Sobic008G132900 Sobic010G094700--Sobic008G132900 Sobic010G094700--Sobic001G393900 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G089600 Sobic001G089600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic001G393900--Sobic004G096400 Sobic001G393900--Sobic007G173500 Sobic006G269800 Sobic006G269800 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400 Sobic003G133900--Sobic004G309900 Sobic001G493200 Sobic001G493200 Sobic003G133900--Sobic001G493200 Sobic002G083500 Sobic002G083500 Sobic003G133900--Sobic002G083500 Sobic001G398800 Sobic001G398800 Sobic003G133900--Sobic001G398800 Sobic003G133900--Sobic007G183900 Sobic005G172500 Sobic005G172500 Sobic003G133900--Sobic005G172500 Sobic003G133900--Sobic006G210000 Sobic004G200200 Sobic004G200200 Sobic003G133900--Sobic004G200200 Sobic007G071200 Sobic007G071200 Sobic003G133900--Sobic007G071200 Sobic009G107300 Sobic009G107300 Sobic009G228000--Sobic009G107300 Sobic003G043000 Sobic003G043000 Sobic009G228000--Sobic003G043000 Sobic004G240400 Sobic004G240400 Sobic009G228000--Sobic004G240400 Sobic009G228000--Sobic003G241700 Sobic003G363700 Sobic003G363700 Sobic009G228000--Sobic003G363700 Sobic002G063900 Sobic002G063900 Sobic009G228000--Sobic002G063900 Sobic003G297500 Sobic003G297500 Sobic009G228000--Sobic003G297500 Sobic004G209700 Sobic004G209700 Sobic009G228000--Sobic004G209700 Sobic006G234700 Sobic006G234700 Sobic009G228000--Sobic006G234700
Octagon: transcription factors


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