Gene annotation
Transcriptome id Sobic.003G362900.1
Synonym TAF12, Sb03g040460, TAFII58
Functional annotation Transcription initiation factor TFIID subunit A containing protein, expressed
UniProt C5XQH8
Pfam PF03847
Panther DB PTHR12264 PTHR12264:SF21
NCBI CDD KOG1142; Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA)
KEGG Orthology K03126; transcription initiation factor TFIID subunit 12
Gene Ontology GO:0006352; DNA-templated transcription, initiation GO:0005669transcription factor TFIID complex


Orthologs (automatic annotation)
TAIR AT3G10070 : TBP-associated factor 12
RAP-DB (Rice) LOC_Os01g63940.1 : Transcription initiation factor TFIID subunit A containing protein, expressed
MaizeGDB (Corn) Zm00025a026775
Brachypodium PNT65403 , KQJ92149
Barley HORVU3Hr1G084430.12 , HORVU3Hr1G084430.13 , HORVU3Hr1G084430.10 , HORVU3Hr1G084430.11 , HORVU3Hr1G084430.8 , HORVU3Hr1G084430.9 , HORVU3Hr1G084430.4 , HORVU3Hr1G084430.5 , HORVU3Hr1G084430.6 , HORVU3Hr1G084430.7 , HORVU3Hr1G084430.1 , HORVU3Hr1G084430.2 , HORVU3Hr1G084430.3
Wheat TraesCS3B02G403500 , TraesCS3A02G371300 , TraesCS3D02G364400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
2 Sobic.001G393900 FAD binding domain containing protein, expressed -
3 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
4 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
5 Sobic.008G147200 tubulin, putative, expressed -
6 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
7 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
8 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
9 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
10 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
11 Sobic.002G048700 BT1 family protein, putative, expressed -
12 Sobic.006G245900 FAR1 family protein, expressed -
13 Sobic.003G016900 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
14 Sobic.001G155400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
15 Sobic.010G051400 zinc finger protein, putative, expressed K04706: E3 SUMO-protein ligase PIAS1
16 Sobic.007G210000 ribosomal L18p/L5e family protein, expressed -
17 Sobic.002G309200 FAR1 family protein, expressed -
18 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
19 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
20 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1


Gene co-expression network
sample Sobic003G362900 Sobic003G362900 Sobic004G321700 Sobic004G321700 Sobic003G362900--Sobic004G321700 Sobic001G393900 Sobic001G393900 Sobic003G362900--Sobic001G393900 Sobic002G145800 Sobic002G145800 Sobic003G362900--Sobic002G145800 Sobic002G052700 Sobic002G052700 Sobic003G362900--Sobic002G052700 Sobic008G147200 Sobic008G147200 Sobic003G362900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic003G362900--Sobic004G285000 Sobic006G269800 Sobic006G269800 Sobic003G362900--Sobic006G269800 Sobic004G309900 Sobic004G309900 Sobic003G362900--Sobic004G309900 Sobic007G011600 Sobic007G011600 Sobic003G362900--Sobic007G011600 Sobic004G321700--Sobic008G147200 Sobic004G321700--Sobic001G393900 Sobic004G332400 Sobic004G332400 Sobic004G321700--Sobic004G332400 Sobic001G346900 Sobic001G346900 Sobic004G321700--Sobic001G346900 Sobic006G002800 Sobic006G002800 Sobic004G321700--Sobic006G002800 Sobic004G321700--Sobic004G309900 Sobic001G003500 Sobic001G003500 Sobic004G321700--Sobic001G003500 Sobic004G321700--Sobic003G362900 Sobic004G321700--Sobic002G052700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G089600 Sobic001G089600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400 Sobic002G145800--Sobic006G269800 Sobic003G416700 Sobic003G416700 Sobic002G145800--Sobic003G416700 Sobic007G183300 Sobic007G183300 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic001G051700 Sobic001G051700 Sobic002G145800--Sobic001G051700 Sobic003G062300 Sobic003G062300 Sobic002G145800--Sobic003G062300 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600 Sobic001G251100 Sobic001G251100 Sobic002G052700--Sobic001G251100 Sobic004G357400 Sobic004G357400 Sobic002G052700--Sobic004G357400 Sobic002G052700--Sobic003G042400 Sobic002G052700--Sobic004G321700 Sobic002G052700--Sobic001G393900 Sobic002G052700--Sobic001G003500 Sobic001G052400 Sobic001G052400 Sobic002G052700--Sobic001G052400 Sobic003G379200 Sobic003G379200 Sobic002G052700--Sobic003G379200 Sobic002G052700--Sobic008G147200 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic008G147200--Sobic006G269800 Sobic008G147200--Sobic010G186600 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800 Sobic004G086200 Sobic004G086200 Sobic004G285000--Sobic004G086200 Sobic004G111000 Sobic004G111000 Sobic004G285000--Sobic004G111000 Sobic004G285000--Sobic001G346900 Sobic003G427100 Sobic003G427100 Sobic004G285000--Sobic003G427100 Sobic009G151200 Sobic009G151200 Sobic004G285000--Sobic009G151200 Sobic010G215900 Sobic010G215900 Sobic004G285000--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic004G285000--Sobic003G409200 Sobic007G044100 Sobic007G044100 Sobic004G285000--Sobic007G044100 Sobic001G013300 Sobic001G013300 Sobic004G285000--Sobic001G013300 Sobic006G269800--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic006G269800--Sobic003G052800 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic006G269800--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500 Sobic003G133900 Sobic003G133900 Sobic004G309900--Sobic003G133900 Sobic007G183900 Sobic007G183900 Sobic004G309900--Sobic007G183900 Sobic004G309900--Sobic003G062300 Sobic006G077200 Sobic006G077200 Sobic004G309900--Sobic006G077200 Sobic004G309900--Sobic004G096400 Sobic002G366400 Sobic002G366400 Sobic004G309900--Sobic002G366400 Sobic006G210000 Sobic006G210000 Sobic004G309900--Sobic006G210000 Sobic004G309900--Sobic003G416700 Sobic001G008200 Sobic001G008200 Sobic004G309900--Sobic001G008200 Sobic004G096500 Sobic004G096500 Sobic007G011600--Sobic004G096500 Sobic010G145800 Sobic010G145800 Sobic007G011600--Sobic010G145800 Sobic007G011600--Sobic002G145800 Sobic006G222300 Sobic006G222300 Sobic007G011600--Sobic006G222300 Sobic010G279700 Sobic010G279700 Sobic007G011600--Sobic010G279700 Sobic005G220000 Sobic005G220000 Sobic007G011600--Sobic005G220000 Sobic007G091600 Sobic007G091600 Sobic007G011600--Sobic007G091600 Sobic005G079800 Sobic005G079800 Sobic007G011600--Sobic005G079800 Sobic008G011100 Sobic008G011100 Sobic007G011600--Sobic008G011100
Octagon: transcription factors


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